RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 IRF3Q14653 427 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 MED22Q15528 200 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 METTL24Q5JXM2 366 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 AFMIDQ63HM1 303 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 ADALQ6DHV7 355 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 TAF2Q6P1X5 1199 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 SHQ1Q6PI26 577 aaKnown RBP6.53□□□□□ -1.36
BRCA1-224ENST00000497488 LINC00114Q6XXX2 140 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 MED25Q71SY5 747 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 CXXC5Q7LFL8 322 aaKnown RBP6.53□□□□□ -1.36
BRCA1-224ENST00000497488 GLRX5Q86SX6 157 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 TTC30AQ86WT1 665 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 MIB1Q86YT6 1006 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 ADGRF2Q8IZF7 708 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 ANKS4BQ8N8V4 417 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 POMGNT2Q8NAT1 580 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 NEDD1Q8NHV4 660 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 GABPB2Q8TAK5 448 aaPredicted RBP6.53□□□□□ -1.36
BRCA1-224ENST00000497488 N4BP2L2Q92802 583 aaPredicted RBP6.53□□□□□ -1.36
BRCA1-224ENST00000497488 GPR20Q99678 358 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 CITED2Q99967 270 aaPredicted RBP6.53□□□□□ -1.36
BRCA1-224ENST00000497488 MYOCQ99972 504 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 MESP1Q9BRJ9 268 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 TRIM5Q9C035 493 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 PCDHB16Q9NRJ7 776 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 BEX4Q9NWD9 120 aaPredicted RBP6.53□□□□□ -1.36
BRCA1-224ENST00000497488 FBXO34Q9NWN3 711 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 HPF1Q9NWY4 346 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 ADPRHL2Q9NX46 363 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 ZSCAN32Q9NX65 697 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 MARCH4Q9P2E8 410 aaPredicted RBP6.53□□□□□ -1.36
BRCA1-224ENST00000497488 DNMT3BQ9UBC3 853 aaKnown RBP6.53□□□□□ -1.36
BRCA1-224ENST00000497488 LIMA1Q9UHB6 759 aaKnown RBP6.53□□□□□ -1.36
BRCA1-224ENST00000497488 SLC23A1Q9UHI7 598 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 SLC45A2Q9UMX9 530 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 KCNE2Q9Y6J6 123 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 KIAA0586Q9BVV6 1533 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 RAPGEF2Q9Y4G8 1499 aa6.53□□□□□ -1.36
BRCA1-224ENST00000497488 ZC3H12DA2A288 527 aaKnown RBP6.52□□□□□ -1.37
BRCA1-224ENST00000497488 CCDC69A6NI79 296 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 NOTOA8MTQ0 251 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 TMEM232C9JQI7 657 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 DDX39AO00148 427 aaKnown RBP6.52□□□□□ -1.37
BRCA1-224ENST00000497488 SYNCRIPO60506 623 aaKnown RBP6.52□□□□□ -1.37
BRCA1-224ENST00000497488 PDE8BO95263 885 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 GGPS1O95749 300 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 CER1O95813 267 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 IL18BPO95998 194 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 RARGP13631 454 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 GP5P40197 560 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 GPD2P43304 727 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 TPD52P55327 224 aaPredicted RBP6.52□□□□□ -1.37
BRCA1-224ENST00000497488 KCNMA1Q12791 1236 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 AIMP2Q13155 320 aaKnown RBP6.52□□□□□ -1.37
BRCA1-224ENST00000497488 RAB41Q5JT25 222 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 MEX3CQ5U5Q3 659 aaKnown RBP6.52□□□□□ -1.37
BRCA1-224ENST00000497488 OTUD7BQ6GQQ9 843 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 DENND1BQ6P3S1 775 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 SYNE3Q6ZMZ3 975 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 CCDC186Q7Z3E2 898 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 ADGRA1Q86SQ6 560 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 TRABD2AQ86V40 505 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 WFDC3Q8IUB2 231 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 DTX3Q8N9I9 347 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 FSIP1Q8NA03 581 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 AGBL5Q8NDL9 886 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 ELP4Q96EB1 424 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 CABS1Q96KC9 395 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 MEGF10Q96KG7 1140 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 PIP5K1AQ99755 562 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 NUDT22Q9BRQ3 303 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 MECRQ9BV79 373 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 ACAT2Q9BWD1 397 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 ANKRD2Q9GZV1 360 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 OPA3Q9H6K4 179 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 COPS7BQ9H9Q2 264 aaPredicted RBP6.52□□□□□ -1.37
BRCA1-224ENST00000497488 LIN7CQ9NUP9 197 aaKnown RBP6.52□□□□□ -1.37
BRCA1-224ENST00000497488 TBCCD1Q9NVR7 557 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 DCAF16Q9NXF7 216 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 SELENONQ9NZV5 590 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 SUCLA2Q9P2R7 463 aaPredicted RBP6.52□□□□□ -1.37
BRCA1-224ENST00000497488 SLCO3A1Q9UIG8 710 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 MOSPD1Q9UJG1 213 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 CDY1Q9Y6F8 540 aa6.52□□□□□ -1.37
BRCA1-224ENST00000497488 TMEM265A0A087WTH1 108 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 TCRBV7S2A1N4TA0A589 114 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 GAGE10A6NGK3 116 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 MYO1GB0I1T2 1018 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 KIAA0391O15091 583 aaKnown RBP6.51□□□□□ -1.37
BRCA1-224ENST00000497488 ZSCAN9O15535 394 aaPredicted RBP6.51□□□□□ -1.37
BRCA1-224ENST00000497488 EFEMP2O95967 443 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 RAP2AP10114 183 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 HLA-DPA1P20036 260 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 RPL7AP62424 266 aaKnown RBP6.51□□□□□ -1.37
BRCA1-224ENST00000497488 CRYMQ14894 314 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 CR1LQ2VPA4 569 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 CACHD1Q5VU97 1274 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 FAM160B1Q5W0V3 765 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 TMEM200BQ69YZ2 307 aa6.51□□□□□ -1.37
BRCA1-224ENST00000497488 NCEH1Q6PIU2 408 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms