RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 PNPLA3Q9NST1 481 aa9.38□□□□□ -0.91
HPS4-217ENST00000496385 MKS1Q9NXB0 559 aa9.38□□□□□ -0.91
HPS4-217ENST00000496385 NCKIPSDQ9NZQ3 722 aa9.38□□□□□ -0.91
HPS4-217ENST00000496385 PRPF19Q9UMS4 504 aaKnown RBP9.38□□□□□ -0.91
HPS4-217ENST00000496385 TIMM22Q9Y584 194 aa9.38□□□□□ -0.91
HPS4-217ENST00000496385 NOX1Q9Y5S8 564 aa9.38□□□□□ -0.91
HPS4-217ENST00000496385 SIPA1L1O43166 1804 aa9.38□□□□□ -0.91
HPS4-217ENST00000496385 E9PMD0 336 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 TNFRSF10AO00220 468 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 XPOTO43592 962 aaKnown RBP9.37□□□□□ -0.91
HPS4-217ENST00000496385 UBE4BO95155 1302 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 HLA-DOAP06340 250 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 HOXD11P31277 338 aaPredicted RBP9.37□□□□□ -0.91
HPS4-217ENST00000496385 CASP4P49662 377 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 STAT2P52630 851 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 SLC25A3Q00325 362 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 CETN1Q12798 172 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 ANKDD1AQ495B1 522 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 GSTA5Q7RTV2 222 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 ITIH5Q86UX2 942 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 CLEC10AQ8IUN9 316 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 PPM1KQ8N3J5 372 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 TTC39CQ8N584 583 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 TBC1D15Q8TC07 691 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 TTC17Q96AE7 1141 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 E2F7Q96AV8 911 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 ISOC1Q96CN7 298 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 CNDP2Q96KP4 475 aaKnown RBP9.37□□□□□ -0.91
HPS4-217ENST00000496385 OSBPL11Q9BXB4 747 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 GCOM2Q9BZD3 368 aaPredicted RBP9.37□□□□□ -0.91
HPS4-217ENST00000496385 DHX33Q9H6R0 707 aaKnown RBP9.37□□□□□ -0.91
HPS4-217ENST00000496385 SMYD3Q9H7B4 428 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 SIRPGQ9P1W8 387 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 PI4KBQ9UBF8 816 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 KIAA1024Q9UPX6 916 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 PPP2R3BQ9Y5P8 575 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 A0A087WXM4 84 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 CENPBD1B2RD01 187 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 GAP43P17677 238 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 CA8P35219 290 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 EPHB1P54762 984 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 AQP5P55064 265 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 MYL7Q01449 175 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 TFAP4Q01664 338 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 TRPC3Q13507 836 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 DPYSQ14117 519 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 VGLL4Q14135 290 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 DCAF6Q58WW2 860 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 ITPRIPL1Q6GPH6 555 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 SH2D5Q6ZV89 423 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 FASTKD5Q7L8L6 764 aaKnown RBP9.37□□□□□ -0.91
HPS4-217ENST00000496385 ZNF354CQ86Y25 554 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 ARID3BQ8IVW6 561 aaPredicted RBP9.37□□□□□ -0.91
HPS4-217ENST00000496385 WDR75Q8IWA0 830 aaKnown RBP9.37□□□□□ -0.91
HPS4-217ENST00000496385 ZNF641Q96N77 438 aaPredicted RBP9.37□□□□□ -0.91
HPS4-217ENST00000496385 RILPQ96NA2 401 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 FAM111AQ96PZ2 611 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 MAN1C1Q9NR34 630 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 TMEM9Q9P0T7 183 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 STK39Q9UEW8 545 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 SERPINB13Q9UIV8 391 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 RIMS3Q9UJD0 308 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 VPS28Q9UK41 221 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 PCDHB13Q9Y5F0 798 aa9.37□□□□□ -0.91
HPS4-217ENST00000496385 C2orf71A6NGG8 1288 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 PSTPIP1O43586 416 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 DGKIO75912 1065 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 TDP2O95551 362 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 CCDC130P13994 396 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 CASP5P51878 434 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 ALDH18A1P54886 795 aaKnown RBP9.36□□□□□ -0.91
HPS4-217ENST00000496385 GPX6P59796 221 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 EFTUD2Q15029 972 aaKnown RBP eCLIP9.36□□□□□ -0.91
HPS4-217ENST00000496385 CYTH1Q15438 398 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 ARHGAP44Q17R89 818 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 RNASEH2BQ5TBB1 312 aaKnown RBP9.36□□□□□ -0.91
HPS4-217ENST00000496385 C12orf60Q5U649 245 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 EGFLAMQ63HQ2 1017 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 PPP1R18Q6NYC8 613 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 ARCQ7LC44 396 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 HAUS6Q7Z4H7 955 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 C11orf74Q86VG3 221 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 PDPRQ8NCN5 879 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 USP33Q8TEY7 942 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 SLC20A1Q8WUM9 679 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 C12orf43Q96C57 262 aaKnown RBP9.36□□□□□ -0.91
HPS4-217ENST00000496385 KLRG1Q96E93 195 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 ZIC5Q96T25 663 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 FERMT1Q9BQL6 677 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 MOV10Q9HCE1 1003 aaKnown RBP9.36□□□□□ -0.91
HPS4-217ENST00000496385 AVENQ9NQS1 362 aaPredicted RBP9.36□□□□□ -0.91
HPS4-217ENST00000496385 DENND3A2RUS2 1198 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 PSMD12O00232 456 aaPredicted RBP9.36□□□□□ -0.91
HPS4-217ENST00000496385 KMOO15229 486 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 MARCH6O60337 910 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 SNNO75324 88 aaPredicted RBP9.36□□□□□ -0.91
HPS4-217ENST00000496385 HSPA8P11142 646 aaKnown RBP9.36□□□□□ -0.91
HPS4-217ENST00000496385 ERFP50548 548 aa9.36□□□□□ -0.91
HPS4-217ENST00000496385 ZNF157P51786 506 aaPredicted RBP9.36□□□□□ -0.91
HPS4-217ENST00000496385 NR1D2Q14995 579 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms