RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 LRMDAQ9H2I8 198 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 ABHD16BQ9H3Z7 469 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 TM9SF1O15321 606 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 SMNDC1O75940 238 aaKnown RBP eCLIP16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 ADARP55265 1226 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 PDK1Q15118 436 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 TBCCQ15814 346 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 HSDL1Q3SXM5 330 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 CELF3Q5SZQ8 465 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 SCUBE3Q8IX30 993 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 GDPD5Q8WTR4 605 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 DDI1Q8WTU0 396 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 SEMA4DQ92854 862 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 ZBED2Q9BTP6 218 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 C10orf88Q9H8K7 445 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 EBF2Q9HAK2 575 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 CYP3A43Q9HB55 503 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 SARS2Q9NP81 518 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 MRPL40Q9NQ50 206 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 SLC12A4Q9UP95 1085 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 HES2Q9Y543 173 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 GOLGA8CPA6NN73 597 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 WFS1O76024 890 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 CDK16Q00536 496 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ART4Q93070 314 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ABI2Q9NYB9 513 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 BARX2Q9UMQ3 279 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 SPEF2Q9C093 1822 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 MGEA5O60502 916 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 S100BP04271 92 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 CREB1P16220 341 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 PCSK7Q16549 785 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ZACNQ401N2 412 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 FOXR2Q6PJQ5 311 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ADGRF2Q8IZF7 708 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 KRT82Q9NSB4 513 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 TJP2Q9UDY2 1190 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 GRID1Q9ULK0 1009 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ADAMTSL3P82987 1691 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ABLIM1O14639 778 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 B4GALT5O43286 388 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 SPAG6O75602 509 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 PIAS1O75925 651 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 LLGL2Q6P1M3 1020 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 KIAA0319LQ8IZA0 1049 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 SAE1Q9UBE0 346 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 TSR3Q9UJK0 312 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 DNPEPQ9ULA0 475 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 PHLPP1O60346 1717 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 EME2A4GXA9 379 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 AKAP10O43572 662 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 SERPINB8P50452 374 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF235Q14590 738 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 MARK2Q7KZI7 788 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 RASGEF1CQ8N431 466 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ASB7Q9H672 318 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 DENND2DQ9H6A0 471 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 SOX13Q9UN79 622 aa16.82■□□□□ 0.28
CCDC88B-209ENST00000494080 ROBO1Q9Y6N7 1651 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 UBA6A0AVT1 1052 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 NFIL3Q16649 462 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 PDK4Q16654 411 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 DEFB107AQ8IZN7 70 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 ATPAF2Q8N5M1 289 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 BSNDQ8WZ55 320 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF669Q96BR6 464 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 SEPT5Q99719 369 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 AVENQ9NQS1 362 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 NCKAP1LP55160 1127 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 TCHHL1Q5QJ38 904 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 EEF1DP3Q658K8 133 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 SPOCK2Q92563 424 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 RMDN1Q96DB5 314 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 VCPIP1Q96JH7 1222 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 GLT1D1Q96MS3 346 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 GCNAQ96QF7 691 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 EGFRP00533 1210 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 TAC1P20366 129 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 BCAT1P54687 386 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 NSUN2Q08J23 767 aaKnown RBP eCLIP16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 MGAT5BQ3V5L5 792 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 PRAMEF19Q5SWL8 479 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 C16orf89Q6UX73 402 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 PALB2Q86YC2 1186 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 IPMKQ8NFU5 416 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 KREMEN1Q96MU8 473 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 DNAJC16Q9Y2G8 782 aa16.81■□□□□ 0.28
CCDC88B-209ENST00000494080 CASTOR2A6NHX0 329 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 SPDYE5A6NIY4 337 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 FESP07332 822 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 ATICP31939 592 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 PTK6Q13882 451 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 HABP4Q5JVS0 413 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 DENND5BQ6ZUT9 1274 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 CLEC4DQ8WXI8 215 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 TRIM62Q9BVG3 475 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 VTA1Q9NP79 307 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 PDGFCQ9NRA1 345 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms