RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ZNF462Q96JM2 2506 aa15.08■□□□□ 0
PRPF40A-211ENST00000493468 FRMD3A2A2Y4 597 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 ZNF233A6NK53 670 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 CLDN5O00501 218 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 TLR5O60602 858 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 PRPF6O94906 941 aaKnown RBP15.07■□□□□ 0
PRPF40A-211ENST00000493468 STAU1O95793 577 aaKnown RBP15.07■□□□□ 0
PRPF40A-211ENST00000493468 PRB1P04280 392 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 IRF1P10914 325 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 TPMTP51580 245 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 TRAPPC11Q7Z392 1133 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 ENGASEQ8NFI3 743 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 SCAMP5Q8TAC9 235 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 NOC3LQ8WTT2 800 aaKnown RBP15.07■□□□□ 0
PRPF40A-211ENST00000493468 MKRN2Q9H000 416 aaKnown RBP15.07■□□□□ 0
PRPF40A-211ENST00000493468 NACA2Q9H009 215 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 DMAP1Q9NPF5 467 aaPredicted RBP15.07■□□□□ 0
PRPF40A-211ENST00000493468 TBC1D7Q9P0N9 293 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 GMIPQ9P107 970 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 LSM7Q9UK45 103 aaKnown RBP15.07■□□□□ 0
PRPF40A-211ENST00000493468 FBXO10Q9UK96 956 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 SLC27A6Q9Y2P4 619 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 STON1Q9Y6Q2 735 aa15.07■□□□□ 0
PRPF40A-211ENST00000493468 A8MXQ7 604 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 KCNJ18B7U540 433 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 WASH3PC4AMC7 463 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 HLA-EP13747 358 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 PLA2G2AP14555 144 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 GRK6P43250 576 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 AFF3P51826 1226 aaKnown RBP15.06■□□□□ 0
PRPF40A-211ENST00000493468 TNNC1P63316 161 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 GOLGA8FQ08AF8 430 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 GOLGA8DPQ0D2H9 430 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 E2F5Q15329 346 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 FAM35AQ86V20 835 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 MARCH9Q86YJ5 346 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 ERLEC1Q96DZ1 483 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 SMARCD1Q96GM5 515 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 KCNK16Q96T55 309 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 NUP58Q9BVL2 599 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 KLF16Q9BXK1 252 aaPredicted RBP15.06■□□□□ 0
PRPF40A-211ENST00000493468 PRORYQ9H606 182 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 KIAA1586Q9HCI6 787 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 OSGEPQ9NPF4 335 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 THAP10Q9P2Z0 257 aaPredicted RBP15.06■□□□□ 0
PRPF40A-211ENST00000493468 BTBD3Q9Y2F9 522 aa15.06■□□□□ 0
PRPF40A-211ENST00000493468 H3BQV1 296 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 PAPSS1O43252 624 aaPredicted RBP15.05■□□□□ -0
PRPF40A-211ENST00000493468 PCDHGA12O60330 932 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 ACO1P21399 889 aaKnown RBP15.05■□□□□ -0
PRPF40A-211ENST00000493468 WDR72Q3MJ13 1102 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 TPGS1Q6ZTW0 290 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 SV2BQ7L1I2 683 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 TMPRSS12Q86WS5 348 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 CBWD2Q8IUF1 395 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 PIP4K2CQ8TBX8 421 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 NXPE2Q96DL1 559 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 SIPA1Q96FS4 1042 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 FGFBP2Q9BYJ0 223 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 CYLDQ9NQC7 956 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 CCDC39Q9UFE4 941 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 EIF2B4Q9UI10 523 aaKnown RBP15.05■□□□□ -0
PRPF40A-211ENST00000493468 NAV2Q8IVL1 2488 aa15.05■□□□□ -0
PRPF40A-211ENST00000493468 NUMA1Q14980 2115 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 A0A1B0GVT2 93 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 FAM149AA5PLN7 773 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 CST3P01034 146 aaPredicted RBP15.04■□□□□ -0
PRPF40A-211ENST00000493468 C7P10643 843 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 GRIA4P48058 902 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 ORC1Q13415 861 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 INAVAQ3KP66 663 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 KLHDC10Q6PID8 442 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 Q6ZNB5 142 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 PAQR9Q6ZVX9 377 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 TMPRSS6Q8IU80 811 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 PRCCQ92733 491 aaPredicted RBP15.04■□□□□ -0
PRPF40A-211ENST00000493468 IGSF8Q969P0 613 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 EPSTI1Q96J88 318 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 DCBLD2Q96PD2 775 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 TRIM9Q9C026 710 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 FBXO44Q9H4M3 255 aa15.04■□□□□ -0
PRPF40A-211ENST00000493468 TLR8Q9NR97 1041 aaKnown RBP15.04■□□□□ -0
PRPF40A-211ENST00000493468 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.04■□□□□ -0
PRPF40A-211ENST00000493468 GOLGA8CPA6NN73 597 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 PENKP01210 267 aaPredicted RBP15.03■□□□□ -0
PRPF40A-211ENST00000493468 ATICP31939 592 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 ATP5C1P36542 298 aaKnown RBP15.03■□□□□ -0
PRPF40A-211ENST00000493468 EIF2S3P41091 472 aaKnown RBP15.03■□□□□ -0
PRPF40A-211ENST00000493468 IL12RB1P42701 662 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 CCT8P50990 548 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 COPAP53621 1224 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 TEAD4Q15561 434 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 KIF19Q2TAC6 998 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 STXBP4Q6ZWJ1 553 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 USP49Q70CQ1 688 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 UCMAQ8WVF2 138 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 TNIP3Q96KP6 325 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 CGRRF1Q99675 332 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 XYLT2Q9H1B5 865 aa15.03■□□□□ -0
PRPF40A-211ENST00000493468 VRTNQ9H8Y1 702 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms