RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 C10orf76Q5T2E6 689 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 TADA2BQ86TJ2 420 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 SUSD6Q92537 303 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 RPGRIP1Q96KN7 1286 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 ZSWIM3Q96MP5 696 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 CFAP57Q96MR6 1250 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 MYADMQ96S97 322 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 TRIM62Q9BVG3 475 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 RNF38Q9H0F5 515 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 FAM204AQ9H8W3 233 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 AVENQ9NQS1 362 aaPredicted RBP16.47■□□□□ 0.23
HPS4-216ENST00000493455 ASNSD1Q9NWL6 643 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 CLIC5Q9NZA1 410 aa16.47■□□□□ 0.23
HPS4-216ENST00000493455 SLC12A8A0AV02 714 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 SIGLEC16A6NMB1 481 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 TMEM110-MUSTN1A8MSY1 372 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 OAS1P00973 400 aaKnown RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 FYNP06241 537 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 GLI1P08151 1106 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 PDGFRAP16234 1089 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 GPD1P21695 349 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 DDX6P26196 483 aaKnown RBP eCLIP16.46■□□□□ 0.23
HPS4-216ENST00000493455 RFC1P35251 1148 aaPredicted RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 ATP5C1P36542 298 aaKnown RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 KCNQ1P51787 676 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 NAP1L1P55209 391 aaKnown RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 GSCP56915 257 aaPredicted RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 PITX1P78337 314 aaPredicted RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 ATP11AP98196 1134 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 NME3Q13232 169 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 PLEKHA7Q6IQ23 1121 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 ZSCAN18Q8TBC5 510 aaPredicted RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 ZNF564Q8TBZ8 553 aaPredicted RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 RXFP2Q8WXD0 754 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 KHSRPQ92945 711 aaKnown RBP eCLIP16.46■□□□□ 0.23
HPS4-216ENST00000493455 BTBD6Q96KE9 485 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 SLC2A13Q96QE2 648 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 MRPL47Q9HD33 250 aaKnown RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 OLA1Q9NTK5 396 aaKnown RBP16.46■□□□□ 0.23
HPS4-216ENST00000493455 MARCH2Q9P0N8 246 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 CDH7Q9ULB5 785 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 STAP1Q9ULZ2 295 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 CPQQ9Y646 472 aa16.46■□□□□ 0.23
HPS4-216ENST00000493455 A0A0U1RQJ8 604 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 TCRBV5S1A1TA0A578 114 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 RCCD1A6NED2 376 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 DPYSL4O14531 572 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 SCAMP3O14828 347 aaKnown RBP16.45■□□□□ 0.22
HPS4-216ENST00000493455 CYP1A2P05177 515 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 SDC4P31431 198 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 SCNN1AP37088 669 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 MATKP42679 507 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 NOP2P46087 812 aaKnown RBP16.45■□□□□ 0.22
HPS4-216ENST00000493455 VAV2P52735 878 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 C15orf59Q2T9L4 293 aaPredicted RBP16.45■□□□□ 0.22
HPS4-216ENST00000493455 SNX30Q5VWJ9 437 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 TRNP1Q6NT89 227 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 POTEHQ6S545 545 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 TAC4Q86UU9 113 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 CMTM8Q8IZV2 173 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 TDRD5Q8NAT2 981 aaKnown RBP16.45■□□□□ 0.22
HPS4-216ENST00000493455 DQX1Q8TE96 717 aaKnown RBP16.45■□□□□ 0.22
HPS4-216ENST00000493455 ATRIPQ8WXE1 791 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 ACSF2Q96CM8 615 aaPredicted RBP16.45■□□□□ 0.22
HPS4-216ENST00000493455 CDK5RAP1Q96SZ6 601 aaKnown RBP16.45■□□□□ 0.22
HPS4-216ENST00000493455 TBCBQ99426 244 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 TRIM7Q9C029 511 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 OSGEPQ9NPF4 335 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 DNMT3LQ9UJW3 386 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 ANAPC7Q9UJX3 599 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 TMEM59LQ9UK28 342 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 FAM50BQ9Y247 325 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 ADGRG1Q9Y653 693 aa16.45■□□□□ 0.22
HPS4-216ENST00000493455 TCF20Q9UGU0 1960 aaKnown RBP16.45■□□□□ 0.22
HPS4-216ENST00000493455 M0QYT0 321 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 PRAMEF12O95522 483 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 TRUB2O95900 331 aaKnown RBP16.44■□□□□ 0.22
HPS4-216ENST00000493455 CCDC175P0C221 793 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 TFE3P19532 575 aaPredicted RBP16.44■□□□□ 0.22
HPS4-216ENST00000493455 PSMA2P25787 234 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 NOS2P35228 1153 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 TUBP50607 506 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 FAM78AQ5JUQ0 283 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 OTOP3Q7RTS5 596 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 ARID3BQ8IVW6 561 aaPredicted RBP16.44■□□□□ 0.22
HPS4-216ENST00000493455 SLC35G2Q8TBE7 412 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 RNF34Q969K3 372 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 GKN1Q9NS71 199 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 DDIT4Q9NX09 232 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.44■□□□□ 0.22
HPS4-216ENST00000493455 CCL26Q9Y258 94 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 USTQ9Y2C2 406 aa16.44■□□□□ 0.22
HPS4-216ENST00000493455 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.44■□□□□ 0.22
HPS4-216ENST00000493455 C2CD4BA6NLJ0 364 aa16.43■□□□□ 0.22
HPS4-216ENST00000493455 C2CD4DB7Z1M9 353 aa16.43■□□□□ 0.22
HPS4-216ENST00000493455 CCP110O43303 1012 aa16.43■□□□□ 0.22
HPS4-216ENST00000493455 BUB1O43683 1085 aa16.43■□□□□ 0.22
HPS4-216ENST00000493455 DESP17661 470 aa16.43■□□□□ 0.22
HPS4-216ENST00000493455 VIPR2P41587 438 aa16.43■□□□□ 0.22
HPS4-216ENST00000493455 SSR1P43307 286 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms