RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 SPATA16Q9BXB7 569 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 PCDH9Q9HC56 1237 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 NT5MQ9NPB1 228 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 CCL15-CCL14A0A0B4J2E2 113 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 TMEM150BA6NC51 233 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 NUP107P57740 925 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 PTPN11Q06124 597 aaPredicted RBP18.12■□□□□ 0.49
NPHP4-209ENST00000489180 NFIL3Q16649 462 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 CCL15Q16663 113 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 ZCCHC23Q6ZST2 131 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 SEPHS2Q99611 448 aa18.12■□□□□ 0.49
NPHP4-209ENST00000489180 KCTD14Q9BQ13 255 aaPredicted RBP18.12■□□□□ 0.49
NPHP4-209ENST00000489180 BCAT1P54687 386 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 POU6F1Q14863 301 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 TBCELQ5QJ74 424 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 ARHGAP17Q68EM7 881 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 RIPOR1Q6ZS17 1223 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 UTP6Q9NYH9 597 aaKnown RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 VPS9D1Q9Y2B5 631 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 CEP170BQ9Y4F5 1589 aaPredicted RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 SALL3Q9BXA9 1300 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 KBTBD13C9JR72 458 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 F5H5T6 163 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 DNALI1O14645 258 aaPredicted RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 UBDO15205 165 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 GRK2P25098 689 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 CNTFP26441 200 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 PPP1R10Q96QC0 940 aaKnown RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 PXMP2Q9NR77 195 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 CD163L1Q9NR16 1453 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 DDX3XO00571 662 aaKnown RBP eCLIP18.11■□□□□ 0.494e-6■■■■■ 29.2
NPHP4-209ENST00000489180 LSM8O95777 96 aaKnown RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 ALOX15P16050 662 aaPredicted RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 PBLDP30039 288 aaPredicted RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 IL17RBQ9NRM6 502 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 TCRBV5S4A2TA0A5A2 114 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 DDTLA6NHG4 134 aaPredicted RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 FKBP6O75344 327 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 RASSF9O75901 435 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 ASS1P00966 412 aaKnown RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 THPOP40225 353 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 RFX3P48380 749 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 ZNF157P51786 506 aaPredicted RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 TRIP4Q15650 581 aaPredicted RBP18.11■□□□□ 0.49
NPHP4-209ENST00000489180 NT5DC3Q86UY8 548 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 CREG2Q8IUH2 290 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 ROGDIQ9GZN7 287 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 RMND5AQ9H871 391 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 LRRC4BQ9NT99 713 aa18.11■□□□□ 0.49
NPHP4-209ENST00000489180 TTLL9Q3SXZ7 439 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 TTMPQ5BVD1 217 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 SNX30Q5VWJ9 437 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 SREK1IP1Q8N9Q2 155 aaPredicted RBP18.1■□□□□ 0.49
NPHP4-209ENST00000489180 TCF7L2Q9NQB0 619 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 NCKIPSDQ9NZQ3 722 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 C6orf203Q9P0P8 240 aaPredicted RBP18.1■□□□□ 0.49
NPHP4-209ENST00000489180 PCDHB7Q9Y5E2 793 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 GAS2O43903 313 aaKnown RBP18.1■□□□□ 0.49
NPHP4-209ENST00000489180 PLA2G6O60733 806 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 HSMCR30P0CW71 290 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 CDC25CP30307 473 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 MGAT5Q09328 741 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 EFEMP1Q12805 493 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 NT5DC1Q5TFE4 455 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 NUDT18Q6ZVK8 323 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 CARNMT1Q8N4J0 409 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 KLHL25Q9H0H3 589 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 FGFR2P21802 821 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 SLC11A2P49281 568 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 TIGD7Q6NT04 549 aaPredicted RBP18.1■□□□□ 0.49
NPHP4-209ENST00000489180 PGBD3Q8N328 593 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 KYQ8NBH2 561 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 SH3GL2Q99962 352 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 RNPEPQ9H4A4 650 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 RIOX1Q9H6W3 641 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 ADGRA3Q8IWK6 1321 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 SLC2A3P11169 496 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 RAG1P15918 1043 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 CPT1AP50416 773 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 TRIM25Q14258 630 aaKnown RBP18.1■□□□□ 0.49
NPHP4-209ENST00000489180 TRMT5Q32P41 509 aaKnown RBP18.1■□□□□ 0.49
NPHP4-209ENST00000489180 FBXO32Q969P5 355 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 KIAA1257Q9ULG3 409 aa18.1■□□□□ 0.49
NPHP4-209ENST00000489180 MGAT1P26572 445 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 SLC34A1Q06495 639 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 APLFQ8IW19 511 aaPredicted RBP18.09■□□□□ 0.49
NPHP4-209ENST00000489180 DNPEPQ9ULA0 475 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 E7ENQ6 273 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 ADRM1Q16186 407 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 MYO1HQ8N1T3 1032 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 SRPK1Q96SB4 655 aaKnown RBP18.09■□□□□ 0.49
NPHP4-209ENST00000489180 NDUFA13Q9P0J0 144 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 SATB2Q9UPW6 733 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 A0A087WZ62 844 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 IQCA1LA6NCM1 817 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 B3GALNT2Q8NCR0 500 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 ATXN2LQ8WWM7 1075 aaKnown RBP18.09■□□□□ 0.49
NPHP4-209ENST00000489180 MPP4Q96JB8 637 aa18.09■□□□□ 0.49
NPHP4-209ENST00000489180 FDXACB1Q9BRP7 624 aaPredicted RBP18.09■□□□□ 0.49
NPHP4-209ENST00000489180 FAM58BPP0C7Q3 252 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms