RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 A0A088AWK7 358 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 TRBV5-3A0A0A0MS03 114 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 LINC01565O15544 149 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 PRPF4O43172 522 aaKnown RBP eCLIP4.01□□□□□ -1.77
SMC4-220ENST00000488017 CAMTA2O94983 1202 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 CDK11BP21127 795 aaKnown RBP4.01□□□□□ -1.77
SMC4-220ENST00000488017 ADRA1DP25100 572 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 HOXA7P31268 230 aaPredicted RBP4.01□□□□□ -1.77
SMC4-220ENST00000488017 ENTPD1P49961 510 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 TXNL4AP83876 142 aaKnown RBP4.01□□□□□ -1.77
SMC4-220ENST00000488017 RAB32Q13637 225 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 ST3GAL2Q16842 350 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 CHPFQ8IZ52 775 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 MSI2Q96DH6 328 aaKnown RBP4.01□□□□□ -1.77
SMC4-220ENST00000488017 PPP1R9BQ96SB3 815 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 CGRRF1Q99675 332 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 USP29Q9HBJ7 922 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 AGO4Q9HCK5 861 aaKnown RBP4.01□□□□□ -1.77
SMC4-220ENST00000488017 MLXIPLQ9NP71 852 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 DNMT3BQ9UBC3 853 aaKnown RBP4.01□□□□□ -1.77
SMC4-220ENST00000488017 SIRT4Q9Y6E7 314 aaPredicted RBP4.01□□□□□ -1.77
SMC4-220ENST00000488017 NOTCH3Q9UM47 2321 aa4.01□□□□□ -1.77
SMC4-220ENST00000488017 A0A087WYN8 130 aa4□□□□□ -1.77
SMC4-220ENST00000488017 CCP110O43303 1012 aa4□□□□□ -1.77
SMC4-220ENST00000488017 RGS10O43665 173 aa4□□□□□ -1.77
SMC4-220ENST00000488017 ATG13O75143 517 aa4□□□□□ -1.77
SMC4-220ENST00000488017 IL33O95760 270 aa4□□□□□ -1.77
SMC4-220ENST00000488017 ALDH2P05091 517 aa4□□□□□ -1.77
SMC4-220ENST00000488017 VCAM1P19320 739 aa4□□□□□ -1.77
SMC4-220ENST00000488017 GATMP50440 423 aa4□□□□□ -1.77
SMC4-220ENST00000488017 RAB1AP62820 205 aa4□□□□□ -1.77
SMC4-220ENST00000488017 DEUP1Q05D60 604 aa4□□□□□ -1.77
SMC4-220ENST00000488017 NADSYN1Q6IA69 706 aa4□□□□□ -1.77
SMC4-220ENST00000488017 MPP5Q8N3R9 675 aa4□□□□□ -1.77
SMC4-220ENST00000488017 FAM71DQ8N9W8 422 aa4□□□□□ -1.77
SMC4-220ENST00000488017 ELP5Q8TE02 316 aa4□□□□□ -1.77
SMC4-220ENST00000488017 PIGKQ92643 395 aa4□□□□□ -1.77
SMC4-220ENST00000488017 VPS50Q96JG6 964 aa4□□□□□ -1.77
SMC4-220ENST00000488017 ZBTB45Q96K62 511 aaPredicted RBP4□□□□□ -1.77
SMC4-220ENST00000488017 MAP3K14Q99558 947 aa4□□□□□ -1.77
SMC4-220ENST00000488017 AGO2Q9UKV8 859 aaKnown RBP4□□□□□ -1.77
SMC4-220ENST00000488017 ASAP1Q9ULH1 1129 aa4□□□□□ -1.77
SMC4-220ENST00000488017 ZNF335Q9H4Z2 1342 aaPredicted RBP3.99□□□□□ -1.77
SMC4-220ENST00000488017 A0A0G2JK05 382 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 SLC22A23A1A5C7 686 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 ALG1L2C9J202 215 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 GRID2O43424 1007 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 TBC1D4O60343 1298 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 RASAL1O95294 804 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 NPR1P16066 1061 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 TFEBP19484 476 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 JAK3P52333 1124 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 SLC13A2Q13183 592 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 SLC39A5Q6ZMH5 540 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 C1GALT1C1Q96EU7 318 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 HSPBAP1Q96EW2 488 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 SPC25Q9HBM1 224 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 ANAPC4Q9UJX5 808 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 ICAM5Q9UMF0 924 aa3.99□□□□□ -1.77
SMC4-220ENST00000488017 LOC102723971A0A1B0GUV8 181 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 PLGP00747 810 aaPredicted RBP3.98□□□□□ -1.77
SMC4-220ENST00000488017 PGDP52209 483 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 CACHD1Q5VU97 1274 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 RBM44Q6ZP01 1051 aaKnown RBP3.98□□□□□ -1.77
SMC4-220ENST00000488017 TFAP2DQ7Z6R9 452 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 OIT3Q8WWZ8 545 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 HPS3Q969F9 1004 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 ZNF668Q96K58 619 aaPredicted RBP3.98□□□□□ -1.77
SMC4-220ENST00000488017 CINPQ9BW66 212 aaPredicted RBP3.98□□□□□ -1.77
SMC4-220ENST00000488017 ZNF518BQ9C0D4 1074 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 SMURF2Q9HAU4 748 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 A1CFQ9NQ94 594 aaKnown RBP3.98□□□□□ -1.77
SMC4-220ENST00000488017 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.98□□□□□ -1.77
SMC4-220ENST00000488017 STAP2Q9UGK3 403 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 STEAP1Q9UHE8 339 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 RIMKLBQ9ULI2 386 aa3.98□□□□□ -1.77
SMC4-220ENST00000488017 A0A1W2PPC1 479 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 TMEM233B4DJY2 109 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 PHGDHO43175 533 aaKnown RBP3.97□□□□□ -1.77
SMC4-220ENST00000488017 PRAMEF2O60811 474 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 ZNF432O94892 652 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 CDKN1CP49918 316 aaPredicted RBP3.97□□□□□ -1.77
SMC4-220ENST00000488017 CCDC15Q0P6D6 951 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 SLC4A8Q2Y0W8 1093 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 ODF3L2Q3SX64 289 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 ATAT1Q5SQI0 421 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 OTUD3Q5T2D3 398 aaPredicted RBP3.97□□□□□ -1.77
SMC4-220ENST00000488017 ZDHHC24Q6UX98 284 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 SPSB4Q96A44 273 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 NUP88Q99567 741 aaPredicted RBP3.97□□□□□ -1.77
SMC4-220ENST00000488017 PIMREGQ9BSJ6 248 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 MOV10Q9HCE1 1003 aaKnown RBP3.97□□□□□ -1.77
SMC4-220ENST00000488017 THSD1Q9NS62 852 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 PLK2Q9NYY3 685 aa3.97□□□□□ -1.77
SMC4-220ENST00000488017 A0A1W2PPL8 197 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 PODXLO00592 558 aa3.96□□□□□ -1.78
SMC4-220ENST00000488017 RRP9O43818 475 aaKnown RBP3.96□□□□□ -1.78
SMC4-220ENST00000488017 PAPSS2O95340 614 aaPredicted RBP3.96□□□□□ -1.78
SMC4-220ENST00000488017 PARP1P09874 1014 aaKnown RBP3.96□□□□□ -1.78
SMC4-220ENST00000488017 HGFP14210 728 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms