RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 SIM2Q14190 667 aaPredicted RBP13.51□□□□□ -0.25
CHMP3-208ENST00000486404 DMC1Q14565 340 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 LPAL2Q16609 132 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 MAN2A1Q16706 1144 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 EXOC3L4Q17RC7 722 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 GAB4Q2WGN9 574 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 GRAMD4Q6IC98 578 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 TPGS1Q6ZTW0 290 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 HTR3DQ70Z44 454 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 WDR5BQ86VZ2 330 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 NAT16Q8N8M0 369 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 SUMF1Q8NBK3 374 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 TSTD1Q8NFU3 115 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 KCTD13Q8WZ19 329 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 WBP2Q969T9 261 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 KREMEN1Q96MU8 473 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 XPO6Q96QU8 1125 aaKnown RBP13.51□□□□□ -0.25
CHMP3-208ENST00000486404 BBS2Q9BXC9 721 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 DCLK3Q9C098 648 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 CNGB3Q9NQW8 809 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 DEC1Q9P2X7 70 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 ZNF510Q9Y2H8 683 aa13.51□□□□□ -0.25
CHMP3-208ENST00000486404 PTPRZ1P23471 2315 aaPredicted RBP13.51□□□□□ -0.25
CHMP3-208ENST00000486404 EP300Q09472 2414 aaPredicted RBP13.5□□□□□ -0.25
CHMP3-208ENST00000486404 SLC12A8A0AV02 714 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 GTPBP10A4D1E9 387 aaKnown RBP13.5□□□□□ -0.25
CHMP3-208ENST00000486404 TULP3O75386 442 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 STC2O76061 302 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 APBB3O95704 486 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 CORO1AP31146 461 aaKnown RBP13.5□□□□□ -0.25
CHMP3-208ENST00000486404 HOXA6P31267 233 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 SLC6A11P48066 632 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 PXNP49023 591 aaPredicted RBP13.5□□□□□ -0.25
CHMP3-208ENST00000486404 CNGA2Q16280 664 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 ARHGAP44Q17R89 818 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 HSP90AA4PQ58FG1 418 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 C10orf76Q5T2E6 689 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 SYT13Q7L8C5 426 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 ZNF276Q8N554 614 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 EZH1Q92800 747 aaPredicted RBP13.5□□□□□ -0.25
CHMP3-208ENST00000486404 BHMTQ93088 406 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 PLD4Q96BZ4 506 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 ST7Q9NRC1 585 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 DNAJC17Q9NVM6 304 aaKnown RBP13.5□□□□□ -0.25
CHMP3-208ENST00000486404 WDR35Q9P2L0 1181 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 APEX2Q9UBZ4 518 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 DMDP11532 3685 aa13.5□□□□□ -0.25
CHMP3-208ENST00000486404 TBC1D3BA6NDS4 549 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 RNF225M0QZC1 329 aaPredicted RBP13.49□□□□□ -0.25
CHMP3-208ENST00000486404 PIK3R2O00459 728 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 THAP12O43422 761 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 RPP40O75818 363 aaKnown RBP13.49□□□□□ -0.25
CHMP3-208ENST00000486404 FBXO21O94952 628 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 LETM1O95202 739 aaPredicted RBP13.49□□□□□ -0.25
CHMP3-208ENST00000486404 KLF8O95600 359 aaPredicted RBP13.49□□□□□ -0.25
CHMP3-208ENST00000486404 CALCAP01258 141 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 TYRP14679 529 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 GNA15P30679 374 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 DAOAP59103 153 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 MRPS21P82921 87 aaKnown RBP13.49□□□□□ -0.25
CHMP3-208ENST00000486404 SRSF5Q13243 272 aaKnown RBP13.49□□□□□ -0.25
CHMP3-208ENST00000486404 PM20D1Q6GTS8 502 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 LAIR1Q6GTX8 287 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 Q6ZNB5 142 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 TRMT11Q7Z4G4 463 aaKnown RBP13.49□□□□□ -0.25
CHMP3-208ENST00000486404 TMEM25Q86YD3 366 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 FMNL3Q8IVF7 1028 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 CCDC33Q8N5R6 958 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 CAMKK1Q8N5S9 505 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 TERB1Q8NA31 727 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 USP33Q8TEY7 942 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 NDRG1Q92597 394 aaKnown RBP13.49□□□□□ -0.25
CHMP3-208ENST00000486404 EDEM1Q92611 657 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 MED15Q96RN5 788 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 ABCC13Q9NSE7 274 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 MARK1Q9P0L2 795 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 MMP17Q9ULZ9 603 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 ZNF292O60281 2723 aa13.49□□□□□ -0.25
CHMP3-208ENST00000486404 MYO18AQ92614 2054 aaKnown RBP13.48□□□□□ -0.25
CHMP3-208ENST00000486404 YJEFN3A6XGL0 299 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 KCNJ18B7U540 433 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 E7ENQ6 273 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 K7EQS6 105 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 AXIN1O15169 862 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 SART1O43290 800 aaKnown RBP13.48□□□□□ -0.25
CHMP3-208ENST00000486404 CACNG3O60359 315 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 GREM1O60565 184 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 ALDH1A2O94788 518 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 MBD3O95983 291 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 CYBBP04839 570 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 TPM2P07951 284 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 SLC9A1P19634 815 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 TIE1P35590 1138 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 CHKAP35790 457 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 TNFRSF4P43489 277 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 HARS2P49590 506 aaKnown RBP13.48□□□□□ -0.25
CHMP3-208ENST00000486404 KCNJ12Q14500 433 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 HSF5Q4G112 596 aaPredicted RBP13.48□□□□□ -0.25
CHMP3-208ENST00000486404 PKDCCQ504Y2 493 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 CT47A1Q5JQC4 288 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms