RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 THAP12O43422 761 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 TMEM225BP0DP42 221 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 ARP10275 920 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 PTGER1P34995 402 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 PRIM2P49643 509 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 CASP5P51878 434 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 CLCA4Q14CN2 919 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 ACOX1Q15067 660 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 ST3GAL2Q16842 350 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 COBLL1Q53SF7 1204 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 KRT28Q7Z3Y7 464 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 FSTL5Q8N475 847 aaPredicted RBP4.65□□□□□ -1.67
VPS41-213ENST00000485955 FAM71DQ8N9W8 422 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 PRSS3P2Q8NHM4 247 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 MBD3L2Q8NHZ7 208 aaPredicted RBP4.65□□□□□ -1.67
VPS41-213ENST00000485955 ZBTB9Q96C00 473 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 VPS50Q96JG6 964 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 FCRL4Q96PJ5 515 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 SAP30LQ9HAJ7 183 aa4.65□□□□□ -1.67
VPS41-213ENST00000485955 TRNAU1APQ9NX07 287 aaKnown RBP4.65□□□□□ -1.67
VPS41-213ENST00000485955 C16orf96A6NNT2 1141 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 CBFA2T3O75081 653 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 TSHRP16473 764 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 FGFR2P21802 821 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 GALNSP34059 522 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 PBX1P40424 430 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 NR4A2P43354 598 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 YPEL5P62699 121 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 DNASE1L3Q13609 305 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 AASDHQ4L235 1098 aaPredicted RBP4.64□□□□□ -1.67
VPS41-213ENST00000485955 CRTC1Q6UUV9 634 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 VSTM1Q6UX27 236 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 NANOGP1Q8N7R0 232 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 ZNF366Q8N895 744 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 NGDNQ8NEJ9 315 aaKnown RBP4.64□□□□□ -1.67
VPS41-213ENST00000485955 COQ8BQ96D53 544 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 SIGLEC11Q96RL6 698 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 TBCBQ99426 244 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 HEYLQ9NQ87 328 aaPredicted RBP4.64□□□□□ -1.67
VPS41-213ENST00000485955 TMEM184CQ9NVA4 438 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 SEMA5BQ9P283 1151 aa4.64□□□□□ -1.67
VPS41-213ENST00000485955 TTC3P53804 2025 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 FOXN3O00409 490 aaPredicted RBP4.63□□□□□ -1.67
VPS41-213ENST00000485955 APAF1O14727 1248 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 KCNQ3O43525 872 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 WDR47O94967 919 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 IGKV2-30P06310 120 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 TMIGD3P0DMS9 266 aaPredicted RBP4.63□□□□□ -1.67
VPS41-213ENST00000485955 TXNL4AP83876 142 aaKnown RBP4.63□□□□□ -1.67
VPS41-213ENST00000485955 GHRHRQ02643 423 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 TMEM63BQ5T3F8 832 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 LCE1AQ5T7P2 110 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 ABLIM2Q6H8Q1 611 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 KIAA0408Q6ZU52 694 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 CCDC33Q8N5R6 958 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 TMEM79Q9BSE2 394 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 SARGQ9BW04 601 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 NAA15Q9BXJ9 866 aaKnown RBP4.63□□□□□ -1.67
VPS41-213ENST00000485955 MTMR4Q9NYA4 1195 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 MYO1AQ9UBC5 1043 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 AFG3L2Q9Y4W6 797 aa4.63□□□□□ -1.67
VPS41-213ENST00000485955 CLCA1A8K7I4 914 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 STT3AP46977 705 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 CFHR1Q03591 330 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 ZNF91Q05481 1191 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 CCDC15Q0P6D6 951 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 KCNJ12Q14500 433 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 CC2D1BQ5T0F9 858 aaKnown RBP4.62□□□□□ -1.67
VPS41-213ENST00000485955 C10orf25Q5T742 122 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 PXDC1Q5TGL8 231 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 RAP1GAP2Q684P5 730 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 SHC4Q6S5L8 630 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 P3H2Q8IVL5 708 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.62□□□□□ -1.67
VPS41-213ENST00000485955 NRACQ8N912 160 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 C9orf106Q8NAJ2 232 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 C16orf52Q8NHV5 167 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 NAF1Q96HR8 494 aaKnown RBP4.62□□□□□ -1.67
VPS41-213ENST00000485955 C8orf48Q96LL4 319 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 WDR24Q96S15 920 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 ZBTB26Q9HCK0 441 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 MLXIPLQ9NP71 852 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 VPS4AQ9UN37 437 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 PCDHB2Q9Y5E7 798 aa4.62□□□□□ -1.67
VPS41-213ENST00000485955 A0A1W2PPC4 97 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 RRHO14718 337 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 COQ9O75208 318 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 RNF8O76064 485 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 FGBP02675 491 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 CYP19A1P11511 503 aaPredicted RBP4.61□□□□□ -1.67
VPS41-213ENST00000485955 PRF1P14222 555 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 THBS4P35443 961 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 RAE1P78406 368 aaKnown RBP4.61□□□□□ -1.67
VPS41-213ENST00000485955 GPS1Q13098 491 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 KPNB1Q14974 876 aaKnown RBP4.61□□□□□ -1.67
VPS41-213ENST00000485955 FAXCQ5TGI0 409 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 TFAP2DQ7Z6R9 452 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 CCDC28AQ8IWP9 274 aa4.61□□□□□ -1.67
VPS41-213ENST00000485955 C16orf71Q8IYS4 520 aaPredicted RBP4.61□□□□□ -1.67
VPS41-213ENST00000485955 HIC2Q96JB3 615 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms