RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CBWD6Q4V339 395 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 CBWD3Q5JTY5 395 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 CBWD5Q5RIA9 395 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 ZNF658Q5TYW1 1059 aaPredicted RBP22.69■■□□□ 1.22
USP40-215ENST00000484528 GRAMD4Q6IC98 578 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 MIB1Q86YT6 1006 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 PGBD3Q8N328 593 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 FRMD1Q8N878 549 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 OLIG1Q8TAK6 271 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 ERLEC1Q96DZ1 483 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 TSG101Q99816 390 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 DNMT3LQ9UJW3 386 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 HCN2Q9UL51 889 aa22.69■■□□□ 1.22
USP40-215ENST00000484528 TRIM49BA6NDI0 452 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 STX10O60499 249 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 ADRB1P08588 477 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 TYRP14679 529 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 RNF43Q68DV7 783 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 ARMCX6Q7L4S7 300 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 CCDC186Q7Z3E2 898 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 CYP2U1Q7Z449 544 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 C11orf74Q86VG3 221 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 CNTNAP3BQ96NU0 1288 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 EDEM2Q9BV94 578 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 CNTNAP3Q9BZ76 1288 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 RASAL2Q9UJF2 1139 aa22.68■■□□□ 1.22
USP40-215ENST00000484528 PATE3B3GLJ2 98 aa22.67■■□□□ 1.22
USP40-215ENST00000484528 HMBSP08397 361 aa22.67■■□□□ 1.22
USP40-215ENST00000484528 MCCD1P59942 119 aaPredicted RBP22.67■■□□□ 1.22
USP40-215ENST00000484528 EGFLAMQ63HQ2 1017 aa22.67■■□□□ 1.22
USP40-215ENST00000484528 ANKRD40Q6AI12 368 aa22.67■■□□□ 1.22
USP40-215ENST00000484528 TOGARAM2Q6ZUX3 1019 aa22.67■■□□□ 1.22
USP40-215ENST00000484528 ENGASEQ8NFI3 743 aa22.67■■□□□ 1.22
USP40-215ENST00000484528 TMEM176AQ96HP8 235 aa22.67■■□□□ 1.22
USP40-215ENST00000484528 XPO6Q96QU8 1125 aaKnown RBP22.67■■□□□ 1.22
USP40-215ENST00000484528 PLK2Q9NYY3 685 aa22.67■■□□□ 1.22
USP40-215ENST00000484528 USP3Q9Y6I4 520 aa22.67■■□□□ 1.22
USP40-215ENST00000484528 SLC16A3O15427 465 aaKnown RBP22.66■■□□□ 1.22
USP40-215ENST00000484528 CACNG3O60359 315 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 STC2O76061 302 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 RALAP11233 206 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 P2RY2P41231 377 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 PLA2G4AP47712 749 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 EFEMP1Q12805 493 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 PREPLQ4J6C6 727 aaPredicted RBP22.66■■□□□ 1.22
USP40-215ENST00000484528 KLHDC10Q6PID8 442 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 Q6ZNB5 142 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 PIGZQ86VD9 579 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 SMARCE1Q969G3 411 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 SPACA7Q96KW9 195 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 GSDMAQ96QA5 445 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 ACOX2Q99424 681 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 MARK1Q9P0L2 795 aa22.66■■□□□ 1.22
USP40-215ENST00000484528 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 LNP1A1A4G5 178 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 TM4SF5O14894 197 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 MAP3K13O43283 966 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 SMC2O95347 1197 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 HOXB2P14652 356 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 PSEN1P49768 467 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 LRMPQ12912 555 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 GOLGA7BQ2TAP0 167 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 ISM2Q6H9L7 571 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 NUDT18Q6ZVK8 323 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 TRMT11Q7Z4G4 463 aaKnown RBP22.65■■□□□ 1.22
USP40-215ENST00000484528 TMEFF1Q8IYR6 380 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 TTC39CQ8N584 583 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 PIGKQ92643 395 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 P2RY11Q96G91 374 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 WDR35Q9P2L0 1181 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 MBD1Q9UIS9 605 aaPredicted RBP22.65■■□□□ 1.22
USP40-215ENST00000484528 ADAMTS9Q9P2N4 1935 aa22.65■■□□□ 1.22
USP40-215ENST00000484528 ASCC3Q8N3C0 2202 aaKnown RBP22.64■■□□□ 1.21
USP40-215ENST00000484528 PRRT4C9JH25 899 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 TULP2O00295 520 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 KLKB1P03952 638 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 NTSR1P30989 418 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 FKBP3Q00688 224 aaKnown RBP22.64■■□□□ 1.21
USP40-215ENST00000484528 CUL2Q13617 745 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 BECN1Q14457 450 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 MAP7D1Q3KQU3 841 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 COBLL1Q53SF7 1204 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 ARHGAP17Q68EM7 881 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 TADA2BQ86TJ2 420 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 ZC3H3Q8IXZ2 948 aaKnown RBP22.64■■□□□ 1.21
USP40-215ENST00000484528 CHPFQ8IZ52 775 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 DDX1Q92499 740 aaKnown RBP22.64■■□□□ 1.21
USP40-215ENST00000484528 FAXDC2Q96IV6 333 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 CLIC5Q9NZA1 410 aa22.64■■□□□ 1.21
USP40-215ENST00000484528 ARMCX3Q9UH62 379 aaPredicted RBP22.64■■□□□ 1.21
USP40-215ENST00000484528 ATXN2Q99700 1313 aaKnown RBP22.63■■□□□ 1.21
USP40-215ENST00000484528 C4orf47A7E2U8 309 aa22.63■■□□□ 1.21
USP40-215ENST00000484528 GABRG2P18507 467 aa22.63■■□□□ 1.21
USP40-215ENST00000484528 PTGER3P43115 390 aa22.63■■□□□ 1.21
USP40-215ENST00000484528 DGKGP49619 791 aa22.63■■□□□ 1.21
USP40-215ENST00000484528 RSRC2Q7L4I2 434 aaKnown RBP22.63■■□□□ 1.21
USP40-215ENST00000484528 LPCAT2Q7L5N7 544 aa22.63■■□□□ 1.21
USP40-215ENST00000484528 ANKRD52Q8NB46 1076 aa22.63■■□□□ 1.21
USP40-215ENST00000484528 SPATA20Q8TB22 786 aa22.63■■□□□ 1.21
USP40-215ENST00000484528 KCNV2Q8TDN2 545 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms