RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ECT2Q9H8V3 914 aa16.64■□□□□ 0.25
UPF3A-208ENST00000484246 ASNSD1Q9NWL6 643 aa16.64■□□□□ 0.25
UPF3A-208ENST00000484246 MARCH2Q9P0N8 246 aa16.64■□□□□ 0.25
UPF3A-208ENST00000484246 STRIP2Q9ULQ0 834 aa16.64■□□□□ 0.25
UPF3A-208ENST00000484246 SH3BP1Q9Y3L3 701 aa16.64■□□□□ 0.25
UPF3A-208ENST00000484246 HBS1LQ9Y450 684 aaKnown RBP16.64■□□□□ 0.25
UPF3A-208ENST00000484246 ZNF638Q14966 1978 aaKnown RBP16.64■□□□□ 0.25
UPF3A-208ENST00000484246 OTOL1A6NHN0 477 aaPredicted RBP16.63■□□□□ 0.25
UPF3A-208ENST00000484246 MDM4O15151 490 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 TARSP26639 723 aaKnown RBP16.63■□□□□ 0.25
UPF3A-208ENST00000484246 SCNN1AP37088 669 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 KPNA1P52294 538 aaPredicted RBP16.63■□□□□ 0.25
UPF3A-208ENST00000484246 SNX16P57768 344 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 AMPD2Q01433 879 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 NNTQ13423 1086 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 PTPN20Q4JDL3 420 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 TRIM72Q6ZMU5 477 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 RSRC2Q7L4I2 434 aaKnown RBP16.63■□□□□ 0.25
UPF3A-208ENST00000484246 ZDHHC17Q8IUH5 632 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 PASD1Q8IV76 773 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 CCDC105Q8IYK2 499 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 CLEC4CQ8WTT0 213 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 FAM3CQ92520 227 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 GOLGA1Q92805 767 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 CLDN23Q96B33 292 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 IQCDQ96DY2 449 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 PPP1R13BQ96KQ4 1090 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 FOXQ1Q9C009 403 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 ST7Q9NRC1 585 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 DLGAP2Q9P1A6 1054 aa16.63■□□□□ 0.25
UPF3A-208ENST00000484246 COL4A3Q01955 1670 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 STC2O76061 302 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 CYP17A1P05093 508 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 FYNP06241 537 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 RPS9P46781 194 aaKnown RBP16.62■□□□□ 0.25
UPF3A-208ENST00000484246 UBASH3AP57075 661 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 NOMO3P69849 1222 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 FMO1Q01740 532 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 EFEMP1Q12805 493 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 TRIP4Q15650 581 aaPredicted RBP16.62■□□□□ 0.25
UPF3A-208ENST00000484246 GAB4Q2WGN9 574 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 CACNA2D4Q7Z3S7 1137 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 SCUBE3Q8IX30 993 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 ADGRG2Q8IZP9 1017 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 ZNF397Q8NF99 534 aaPredicted RBP16.62■□□□□ 0.25
UPF3A-208ENST00000484246 IPO4Q8TEX9 1081 aaKnown RBP16.62■□□□□ 0.25
UPF3A-208ENST00000484246 RNF139Q8WU17 664 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 WBP2Q969T9 261 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 PLD4Q96BZ4 506 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 IER2Q9BTL4 223 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 MIS12Q9H081 205 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 LINC00597Q9H2U6 94 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 RASAL2Q9UJF2 1139 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 LSM7Q9UK45 103 aaKnown RBP16.62■□□□□ 0.25
UPF3A-208ENST00000484246 NUDT5Q9UKK9 219 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 ZNF510Q9Y2H8 683 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 SIT1Q9Y3P8 196 aa16.62■□□□□ 0.25
UPF3A-208ENST00000484246 HELZP42694 1942 aaKnown RBP16.62■□□□□ 0.25
UPF3A-208ENST00000484246 MYO16Q9Y6X6 1858 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 TRIOO75962 3097 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 PIK3R2O00459 728 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 TRDMT1O14717 391 aaKnown RBP16.61■□□□□ 0.25
UPF3A-208ENST00000484246 NCAM2O15394 837 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 HOXC11O43248 304 aaPredicted RBP16.61■□□□□ 0.25
UPF3A-208ENST00000484246 LATS1O95835 1130 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 IGLV3-27P01718 113 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 CYP1A1P04798 512 aaPredicted RBP16.61■□□□□ 0.25
UPF3A-208ENST00000484246 MMEP08473 750 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 CCDC172P0C7W6 258 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 FERP16591 822 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 CHRNB2P17787 502 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 GJA4P35212 333 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 EIF2DP41214 584 aaKnown RBP16.61■□□□□ 0.25
UPF3A-208ENST00000484246 GABRB2P47870 512 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 SOX9P48436 509 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 NR1H3Q13133 447 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 TXNDC11Q6PKC3 985 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 OLFML1Q6UWY5 402 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 TOGARAM2Q6ZUX3 1019 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 SLC26A9Q7LBE3 791 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 MIB1Q86YT6 1006 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 BBS7Q8IWZ6 715 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 FAM217AQ8IXS0 508 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 SLC20A1Q8WUM9 679 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 EXOC4Q96A65 974 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 SLC2A13Q96QE2 648 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 PRRX2Q99811 253 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 SYT11Q9BT88 431 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 NUP58Q9BVL2 599 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 DCLK3Q9C098 648 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 MARK1Q9P0L2 795 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 TJP2Q9UDY2 1190 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 ARIH1Q9Y4X5 557 aaPredicted RBP16.61■□□□□ 0.25
UPF3A-208ENST00000484246 ITIH6Q6UXX5 1313 aa16.61■□□□□ 0.25
UPF3A-208ENST00000484246 A0A1W2PQJ5 194 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 FAM170BA6NMN3 283 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 PI15O43692 258 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 HSF2BPO75031 334 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 ADH1CP00326 375 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 IGLV3-25P01717 112 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms