RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MAB21L3Q8N8X9 362 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 SMRP1Q8NCR6 262 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 MAFAQ8NHW3 353 aaPredicted RBP12.79□□□□□ -0.36
SDC1-206ENST00000482879 ING5Q8WYH8 240 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 TSGA10Q9BZW7 698 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 TRIM7Q9C029 511 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 NACA2Q9H009 215 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 TASP1Q9H6P5 420 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 OSGEPQ9NPF4 335 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 OLA1Q9NTK5 396 aaKnown RBP12.79□□□□□ -0.36
SDC1-206ENST00000482879 TRIM10Q9UDY6 481 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 ANAPC7Q9UJX3 599 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 COG5Q9UP83 839 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 DUSP10Q9Y6W6 482 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 CLUHO75153 1309 aa12.79□□□□□ -0.36
SDC1-206ENST00000482879 REV3LO60673 3130 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 TRAV19A0A0A6YYK7 116 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 BTNL10A8MVZ5 291 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 MYO1FO00160 1098 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 MDM4O15151 490 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 COCHO43405 550 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 KRT86O43790 486 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 MTA2O94776 668 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 OAS1P00973 400 aaKnown RBP12.78□□□□□ -0.36
SDC1-206ENST00000482879 PFKLP17858 780 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 HDCP19113 662 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 PSMA2P25787 234 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 DDX6P26196 483 aaKnown RBP eCLIP12.78□□□□□ -0.36
SDC1-206ENST00000482879 SDC4P31431 198 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 ATP5C1P36542 298 aaKnown RBP12.78□□□□□ -0.36
SDC1-206ENST00000482879 SULT1E1P49888 294 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 EFEMP1Q12805 493 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 TCEAL1Q15170 157 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 CCDC14Q49A88 953 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 STXBP5Q5T5C0 1151 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 MSANTD2Q6P1R3 559 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 ARL14EPQ8N8R7 260 aaPredicted RBP12.78□□□□□ -0.36
SDC1-206ENST00000482879 DQX1Q8TE96 717 aaKnown RBP12.78□□□□□ -0.36
SDC1-206ENST00000482879 BTBD6Q96KE9 485 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 CFAP57Q96MR6 1250 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 NECTIN4Q96NY8 510 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 CYP2S1Q96SQ9 504 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 SLC46A2Q9BY10 475 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 RNF38Q9H0F5 515 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 SLITRK6Q9H5Y7 841 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 LZTFL1Q9NQ48 299 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 TRMT1Q9NXH9 659 aaKnown RBP12.78□□□□□ -0.36
SDC1-206ENST00000482879 RRN3Q9NYV6 651 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 RASAL2Q9UJF2 1139 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 DNMT3LQ9UJW3 386 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 STAP1Q9ULZ2 295 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 GUCA1BQ9UMX6 200 aa12.78□□□□□ -0.36
SDC1-206ENST00000482879 USP15Q9Y4E8 981 aaPredicted RBP12.78□□□□□ -0.36
SDC1-206ENST00000482879 HELZP42694 1942 aaKnown RBP12.78□□□□□ -0.36
SDC1-206ENST00000482879 DENND4AQ7Z401 1863 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 MACROD2A1Z1Q3 448 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 GRXCR2A6NFK2 248 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 SOBPA7XYQ1 873 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 M0QYT0 321 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 DPYSL4O14531 572 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 BUB1O43683 1085 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 TRUB2O95900 331 aaKnown RBP12.77□□□□□ -0.37
SDC1-206ENST00000482879 MBL2P11226 248 aaPredicted RBP12.77□□□□□ -0.37
SDC1-206ENST00000482879 DESP17661 470 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 GBP1P32455 592 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 DEKP35659 375 aaKnown RBP12.77□□□□□ -0.37
SDC1-206ENST00000482879 ARHGAP25P42331 645 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 PTPN9P43378 593 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 ZNF143P52747 638 aaPredicted RBP12.77□□□□□ -0.37
SDC1-206ENST00000482879 PITX1P78337 314 aaPredicted RBP12.77□□□□□ -0.37
SDC1-206ENST00000482879 ATP11AP98196 1134 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 OGDHQ02218 1023 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 SMAD4Q13485 552 aaKnown RBP12.77□□□□□ -0.37
SDC1-206ENST00000482879 CBX2Q14781 532 aaPredicted RBP12.77□□□□□ -0.37
SDC1-206ENST00000482879 C15orf59Q2T9L4 293 aaPredicted RBP12.77□□□□□ -0.37
SDC1-206ENST00000482879 SLC25A52Q3SY17 297 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 ARHGAP29Q52LW3 1261 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 KLHDC10Q6PID8 442 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 ZNF662Q6ZS27 426 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 GET4Q7L5D6 327 aaPredicted RBP12.77□□□□□ -0.37
SDC1-206ENST00000482879 ADAM32Q8TC27 787 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 FNIP1Q8TF40 1166 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 SUSD6Q92537 303 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 SLC22A12Q96S37 553 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 TBCBQ99426 244 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 NPY6RQ99463 290 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 CNPY3Q9BT09 278 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 POMKQ9H5K3 350 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 FAM204AQ9H8W3 233 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 MARCH2Q9P0N8 246 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 IP6K2Q9UHH9 426 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 SFMBT1Q9UHJ3 866 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 ZMYM5Q9UJ78 669 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 SALL4Q9UJQ4 1053 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 PAXBP1Q9Y5B6 917 aa12.77□□□□□ -0.37
SDC1-206ENST00000482879 NUP210Q8TEM1 1887 aaPredicted RBP12.76□□□□□ -0.37
SDC1-206ENST00000482879 SYNJ2BP-COX16A0A087WUM0 186 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 SLC12A8A0AV02 714 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 TMEM110-MUSTN1A8MSY1 372 aa12.76□□□□□ -0.37
SDC1-206ENST00000482879 CCP110O43303 1012 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms