RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 GADL1Q6ZQY3 521 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 ARPINQ7Z6K5 226 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 TRIM74Q86UV6 250 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 TRIM73Q86UV7 250 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 KATNAL2Q8IYT4 538 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 CLEC4FQ8N1N0 589 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 ALLCQ8N6M5 410 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 KYQ8NBH2 561 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 PBXIP1Q96AQ6 731 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 PRMT6Q96LA8 375 aaPredicted RBP13.95□□□□□ -0.18
USP42-206ENST00000479544 ACSS3Q9H6R3 686 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 KCNK4Q9NYG8 393 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 SNX5Q9Y5X3 404 aa13.95□□□□□ -0.18
USP42-206ENST00000479544 VCLP18206 1134 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 GPD1P21695 349 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 SPRP35270 261 aaPredicted RBP13.94□□□□□ -0.18
USP42-206ENST00000479544 C15orf59Q2T9L4 293 aaPredicted RBP13.94□□□□□ -0.18
USP42-206ENST00000479544 FNBP1LQ5T0N5 605 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 ITPRIPL1Q6GPH6 555 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 FAM131BQ86XD5 332 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 COMMD3-BMI1R4GMX3 469 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 LTN1O94822 1766 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 CCDC189A1A4V9 331 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 KCNK1O00180 336 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 PARNO95453 639 aaKnown RBP13.94□□□□□ -0.18
USP42-206ENST00000479544 STRIP1Q5VSL9 837 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 C10orf82Q8WW14 230 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 EFCAB1Q9HAE3 211 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 AS3MTQ9HBK9 375 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 CHST12Q9NRB3 414 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 XPOTO43592 962 aaKnown RBP13.94□□□□□ -0.18
USP42-206ENST00000479544 GLRA3O75311 464 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 POLBP06746 335 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 DSG3P32926 999 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 PLK1P53350 603 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 AQP4P55087 323 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 LBRQ14739 615 aaKnown RBP13.94□□□□□ -0.18
USP42-206ENST00000479544 MAPK11Q15759 364 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 XKR3Q5GH77 459 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 OTUD3Q5T2D3 398 aaPredicted RBP13.94□□□□□ -0.18
USP42-206ENST00000479544 TLDC1Q6P9B6 456 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 STRA8Q7Z7C7 330 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 TTLL6Q8N841 843 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 ARL10Q8N8L6 244 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 BHLHE22Q8NFJ8 381 aaPredicted RBP13.94□□□□□ -0.18
USP42-206ENST00000479544 WNK4Q96J92 1243 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 ZNF277Q9NRM2 450 aaPredicted RBP13.94□□□□□ -0.18
USP42-206ENST00000479544 WDR35Q9P2L0 1181 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 PPM1HQ9ULR3 514 aa13.94□□□□□ -0.18
USP42-206ENST00000479544 AGRPO00253 132 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 TNFAIP8O95379 198 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 ITGB3P05106 788 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 CCR3P51677 355 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 CDC16Q13042 620 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 DGKDQ16760 1214 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 TDRD5Q8NAT2 981 aaKnown RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 ADAM32Q8TC27 787 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 FSD1LQ9BXM9 530 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 KLHL25Q9H0H3 589 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 ATXN10Q9UBB4 475 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 SUN2Q9UH99 717 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 TGM2P21980 687 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 GTF2A2P52657 109 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 AGKQ53H12 422 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 DCAF15Q66K64 600 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 RAB44Q7Z6P3 723 aaPredicted RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 EBF4Q9BQW3 602 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 MMADHCQ9H3L0 296 aaPredicted RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 AVENQ9NQS1 362 aaPredicted RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 CCDC167Q9P0B6 97 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 ANGPT2O15123 496 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 MOCS2O96007 188 aaPredicted RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 ERVK-10P10266 1014 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 TCF4P15884 667 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 EPHA3P29320 983 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 HOXD13P35453 343 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 RPL5P46777 297 aaKnown RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 C6orf10Q5SRN2 563 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 SEL1L3Q68CR1 1132 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 NET1Q7Z628 596 aaPredicted RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 SKA2Q8WVK7 121 aaPredicted RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 KIF12Q96FN5 646 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 WRNIP1Q96S55 665 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 WDR55Q9H6Y2 383 aaPredicted RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 SARS2Q9NP81 518 aaKnown RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 PKD2L2Q9NZM6 624 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 AP4B1Q9Y6B7 739 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 PSMD10O75832 226 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 STAT5BP51692 787 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 GCNT1Q02742 428 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 C1QBPQ07021 282 aaKnown RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 SURF1Q15526 300 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 FAM47CQ5HY64 1035 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 HEATR4Q86WZ0 1026 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 FAM172AQ8WUF8 416 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 LENG1Q96BZ8 264 aaPredicted RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 PRR11Q96HE9 360 aaPredicted RBP13.93□□□□□ -0.18
USP42-206ENST00000479544 VPS50Q96JG6 964 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 SLC7A8Q9UHI5 535 aa13.93□□□□□ -0.18
USP42-206ENST00000479544 OR6B1O95007 311 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms