RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 LUC7LQ9NQ29 371 aaKnown RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 TRMT1Q9NXH9 659 aaKnown RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 TRIM10Q9UDY6 481 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 ADAM28Q9UKQ2 775 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 DSEQ9UL01 958 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 KIAA1257Q9ULG3 409 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.04□□□□□ -1.28
USP48-208ENST00000479177 TFR2Q9UP52 801 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 STXBP5LQ9Y2K9 1186 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 TIMM13Q9Y5L4 95 aaPredicted RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 MRPL42Q9Y6G3 142 aaKnown RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 LAMA2P24043 3122 aaKnown RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 NLRC5Q86WI3 1866 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 PATJQ8NI35 1801 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 SF3B1O75533 1304 aaKnown RBP eCLIP7.03□□□□□ -1.283e-8■■■■■ 37.3
USP48-208ENST00000479177 MYH10P35580 1976 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 GOLGA6L9A6NEM1 432 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 BTNL10A8MVZ5 291 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 M0QYV0 167 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 SYN3O14994 580 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 PJA2O43164 708 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 MED7O43513 233 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 TRAPPC3O43617 180 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 RTN2O75298 545 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 GJB5O95377 273 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 PDGFRBP09619 1106 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 H2AFZP0C0S5 128 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 TMEM253P0C7T8 217 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 LINC00271P0C7V0 271 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 LAG3P18627 525 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 ACAT1P24752 427 aaKnown RBP7.03□□□□□ -1.28
USP48-208ENST00000479177 LMO2P25791 158 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 MAOBP27338 520 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 PCSK1P29120 753 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 MAGEA1P43355 309 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 PREPP48147 710 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 IRAK1P51617 712 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 PSMC1P62191 440 aaKnown RBP7.03□□□□□ -1.28
USP48-208ENST00000479177 ELAVL2Q12926 359 aaKnown RBP7.03□□□□□ -1.28
USP48-208ENST00000479177 BTG3Q14201 252 aaPredicted RBP7.03□□□□□ -1.28
USP48-208ENST00000479177 STILQ15468 1287 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 CNGA2Q16280 664 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 GOLGA7BQ2TAP0 167 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 OVOS1Q6IE37 1185 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 FUT10Q6P4F1 479 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 LCLAT1Q6UWP7 414 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.03□□□□□ -1.28
USP48-208ENST00000479177 H2AFVQ71UI9 128 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 MON1BQ7L1V2 547 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 METTL23Q86XA0 190 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 DNAAF5Q86Y56 855 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 HERC6Q8IVU3 1022 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 RNF168Q8IYW5 571 aaPredicted RBP7.03□□□□□ -1.28
USP48-208ENST00000479177 SLC39A11Q8N1S5 342 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 ARMC10Q8N2F6 343 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 TXLNBQ8N3L3 684 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 COLGALT1Q8NBJ5 622 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 B3GALNT2Q8NCR0 500 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 TMEM35BQ8NCS4 154 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 C1orf131Q8NDD1 294 aaKnown RBP7.03□□□□□ -1.28
USP48-208ENST00000479177 DPF3Q92784 378 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 CYFIP2Q96F07 1278 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 TNIP3Q96KP6 325 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 HEXIM2Q96MH2 286 aaKnown RBP7.03□□□□□ -1.28
USP48-208ENST00000479177 ZNF558Q96NG5 402 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 YME1L1Q96TA2 773 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 PKMYT1Q99640 499 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 COLEC11Q9BWP8 271 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 VN1R3Q9BXE9 311 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 GPR62Q9BZJ7 368 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 TSGA10Q9BZW7 698 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 DNAI2Q9GZS0 605 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 ISCUQ9H1K1 167 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 LHX5Q9H2C1 402 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 CRTAC1Q9NQ79 661 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 FAM49BQ9NUQ9 324 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 DDX43Q9NXZ2 648 aaKnown RBP7.03□□□□□ -1.28
USP48-208ENST00000479177 CDH9Q9ULB4 789 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 INTUQ9ULD6 942 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 FAN1Q9Y2M0 1017 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 CHD7Q9P2D1 2997 aa7.03□□□□□ -1.28
USP48-208ENST00000479177 GBF1Q92538 1859 aa7.02□□□□□ -1.28
USP48-208ENST00000479177 TRANK1O15050 2925 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 TRIOBPQ9H2D6 2365 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 FAM170AA1A519 330 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 TMCO5BA8MYB1 307 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 NT5C1B-RDH14C9J2C7 533 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 TNRC18O15417 2968 aaPredicted RBP7.02□□□□□ -1.29
USP48-208ENST00000479177 ATP2C2O75185 946 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 TADA2AO75478 443 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 OAZ2O95190 189 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 FTLP02792 175 aaPredicted RBP7.02□□□□□ -1.29
USP48-208ENST00000479177 ALDH2P05091 517 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 SETSIPP0DME0 302 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 CCDC130P13994 396 aa7.02□□□□□ -1.29
USP48-208ENST00000479177 ATP2A2P16615 1042 aaKnown RBP7.02□□□□□ -1.29
USP48-208ENST00000479177 PTPN1P18031 435 aaKnown RBP7.02□□□□□ -1.29
USP48-208ENST00000479177 MAGEA10P43363 369 aaPredicted RBP7.02□□□□□ -1.29
USP48-208ENST00000479177 NSFP46459 744 aaKnown RBP7.02□□□□□ -1.29
USP48-208ENST00000479177 GALCP54803 685 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms