RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MDGA1Q8NFP4 955 aa19.52■□□□□ 0.72
COL7A1-209ENST00000474432 OLIG1Q8TAK6 271 aa19.52■□□□□ 0.72
COL7A1-209ENST00000474432 NELFBQ8WX92 580 aa19.52■□□□□ 0.72
COL7A1-209ENST00000474432 NDRG1Q92597 394 aaKnown RBP19.52■□□□□ 0.72
COL7A1-209ENST00000474432 KAT5Q92993 513 aa19.52■□□□□ 0.72
COL7A1-209ENST00000474432 CNOT6LQ96LI5 555 aaKnown RBP19.52■□□□□ 0.72
COL7A1-209ENST00000474432 ZSWIM1Q9BR11 485 aa19.52■□□□□ 0.72
COL7A1-209ENST00000474432 TPSD1Q9BZJ3 242 aa19.52■□□□□ 0.72
COL7A1-209ENST00000474432 DEC1Q9P2X7 70 aa19.52■□□□□ 0.72
COL7A1-209ENST00000474432 TSPAN16Q9UKR8 245 aa19.52■□□□□ 0.72
COL7A1-209ENST00000474432 INVSQ9Y283 1065 aa19.52■□□□□ 0.72
COL7A1-209ENST00000474432 NUP205Q92621 2012 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 RNF225M0QZC1 329 aaPredicted RBP19.51■□□□□ 0.71
COL7A1-209ENST00000474432 O00370 1275 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 BIN1O00499 593 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 CACNG3O60359 315 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 STIM1Q13586 685 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 SF3A2Q15428 464 aaKnown RBP19.51■□□□□ 0.71
COL7A1-209ENST00000474432 GOLGA7BQ2TAP0 167 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 HSF5Q4G112 596 aaPredicted RBP19.51■□□□□ 0.71
COL7A1-209ENST00000474432 ANO7Q6IWH7 933 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 TFAP2BQ92481 460 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 DNAI2Q9GZS0 605 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 RXFP3Q9NSD7 469 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 THADAQ6YHU6 1953 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 PLXND1Q9Y4D7 1925 aa19.51■□□□□ 0.71
COL7A1-209ENST00000474432 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.5■□□□□ 0.71
COL7A1-209ENST00000474432 CISD3P0C7P0 127 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 ZNF806P0C7X5 589 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 PPP1R2P41236 205 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 TKTL1P51854 596 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 BTBD8Q5XKL5 378 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 TPGS1Q6ZTW0 290 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 TRIM59Q8IWR1 403 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 ULBP1Q9BZM6 244 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 SMOC1Q9H4F8 434 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 CD248Q9HCU0 757 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 FBXO10Q9UK96 956 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 CDV3Q9UKY7 258 aaKnown RBP19.5■□□□□ 0.71
COL7A1-209ENST00000474432 CTNND2Q9UQB3 1225 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 STARD13Q9Y3M8 1113 aa19.5■□□□□ 0.71
COL7A1-209ENST00000474432 TBC1D3BA6NDS4 549 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 PRRT4C9JH25 899 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 NEDD8-MDP1E9PL57 170 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 SLC30A4O14863 429 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 XPO1O14980 1071 aaKnown RBP19.49■□□□□ 0.71
COL7A1-209ENST00000474432 RALAP11233 206 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 VDRP11473 427 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 TYRP14679 529 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 SDHBP21912 280 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 BCKDHBP21953 392 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 STX17P56962 302 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 YWHAGP61981 247 aaKnown RBP eCLIP19.49■□□□□ 0.71
COL7A1-209ENST00000474432 SGO2Q562F6 1265 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 TOGARAM2Q6ZUX3 1019 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 UBA3Q8TBC4 463 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 NETO1Q8TDF5 533 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 MED15Q96RN5 788 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 RTKNQ9BST9 563 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 BBS2Q9BXC9 721 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 DNAJC17Q9NVM6 304 aaKnown RBP19.49■□□□□ 0.71
COL7A1-209ENST00000474432 WDR35Q9P2L0 1181 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 LSM7Q9UK45 103 aaKnown RBP19.49■□□□□ 0.71
COL7A1-209ENST00000474432 CIZ1Q9ULV3 898 aaPredicted RBP19.49■□□□□ 0.71
COL7A1-209ENST00000474432 PCDHGA5Q9Y5G8 931 aa19.49■□□□□ 0.71
COL7A1-209ENST00000474432 TNRC6BQ9UPQ9 1833 aaKnown RBP19.48■□□□□ 0.71
COL7A1-209ENST00000474432 DCDC2BA2VCK2 349 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 ZBED1O96006 694 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 CALCAP01258 141 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 CD19P15391 556 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 TBXAS1P24557 533 aaPredicted RBP19.48■□□□□ 0.71
COL7A1-209ENST00000474432 BCAT1P54687 386 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 MARSP56192 900 aaKnown RBP19.48■□□□□ 0.71
COL7A1-209ENST00000474432 GOLGA8FQ08AF8 430 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 GOLGA8DPQ0D2H9 430 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 BST2Q10589 180 aaKnown RBP19.48■□□□□ 0.71
COL7A1-209ENST00000474432 EFEMP1Q12805 493 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 CCDC40Q4G0X9 1142 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 EOGTQ5NDL2 527 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 C10orf76Q5T2E6 689 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 GRAMD4Q6IC98 578 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 LCLAT1Q6UWP7 414 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 ARHGEF19Q8IW93 802 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 FRMD1Q8N878 549 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 KCNV2Q8TDN2 545 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 ACOX2Q99424 681 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 RASAL2Q9UJF2 1139 aa19.48■□□□□ 0.71
COL7A1-209ENST00000474432 CNOT1A5YKK6 2376 aaKnown RBP19.47■□□□□ 0.71
COL7A1-209ENST00000474432 P4HA2O15460 535 aa19.47■□□□□ 0.71
COL7A1-209ENST00000474432 PENKP01210 267 aaPredicted RBP19.47■□□□□ 0.71
COL7A1-209ENST00000474432 MPLP40238 635 aa19.47■□□□□ 0.71
COL7A1-209ENST00000474432 YWHAEP62258 255 aaKnown RBP19.47■□□□□ 0.71
COL7A1-209ENST00000474432 COG7P83436 770 aa19.47■□□□□ 0.71
COL7A1-209ENST00000474432 USP39Q53GS9 565 aaKnown RBP19.47■□□□□ 0.71
COL7A1-209ENST00000474432 FYB2Q5VWT5 728 aa19.47■□□□□ 0.71
COL7A1-209ENST00000474432 EGFLAMQ63HQ2 1017 aa19.47■□□□□ 0.71
COL7A1-209ENST00000474432 PMS2CLQ68D20 193 aa19.47■□□□□ 0.71
COL7A1-209ENST00000474432 TMEM270Q6UE05 265 aa19.47■□□□□ 0.71
COL7A1-209ENST00000474432 TADA2BQ86TJ2 420 aa19.47■□□□□ 0.71
COL7A1-209ENST00000474432 ARHGAP18Q8N392 663 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms