RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MYLK2Q9H1R3 596 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 CNNM1Q9NRU3 951 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 GJB4Q9NTQ9 266 aa4.05□□□□□ -1.76
CCDC88A-212ENST00000474059 TBX3O15119 743 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 PARP1P09874 1014 aaKnown RBP4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 PGGT1BP53609 377 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 CACHD1Q5VU97 1274 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 ATG9BQ674R7 924 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 GRHL2Q6ISB3 625 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 SWSAP1Q6NVH7 229 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 GSG1LQ6UXU4 331 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 FAM57BQ71RH2 274 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 CUZD1Q86UP6 607 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 TMPRSS12Q86WS5 348 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 DNASE2BQ8WZ79 361 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 NR4A3Q92570 626 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 VPS45Q9NRW7 570 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 SELENONQ9NZV5 590 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 VPS51Q9UID3 782 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 COL4A3BPQ9Y5P4 624 aa4.04□□□□□ -1.76
CCDC88A-212ENST00000474059 CA12O43570 354 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 UBXN7O94888 489 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 RASAL1O95294 804 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 ADRA1DP25100 572 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 NTSR1P30989 418 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 HTR7P34969 479 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 IL6STP40189 918 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 POLD2P49005 469 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 GATMP50440 423 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 PPATQ06203 517 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 FAM110CQ1W6H9 321 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 IL31RAQ8NI17 732 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 MEIS3Q99687 375 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 BRINP2Q9C0B6 783 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 NUAK2Q9H093 628 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 PCDH12Q9NPG4 1184 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 PCDHA7Q9UN72 937 aa4.03□□□□□ -1.76
CCDC88A-212ENST00000474059 EVPLQ92817 2033 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 SPATA31A1Q5TZJ5 1347 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 H3BML4 177 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 NTN3O00634 580 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 CCP110O43303 1012 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 CD19P15391 556 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 IBSPP21815 317 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 RPS6KB1P23443 525 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 GALNSP34059 522 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 PTDSS1P48651 473 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 MTHFSP49914 203 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 PGDP52209 483 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 ITGA8P53708 1063 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 PFKFB3Q16875 520 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 LCE1FQ5T754 118 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 CAPRIN2Q6IMN6 1127 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 RBM44Q6ZP01 1051 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 DENND1CQ8IV53 801 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 C11orf44Q8N8P7 122 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 ZCRB1Q8TBF4 217 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 BCAS4Q8TDM0 211 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 NEUROG1Q92886 237 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 SPSB4Q96A44 273 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 CHMP4CQ96CF2 233 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 PPP1R9BQ96SB3 815 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 ZNF518BQ9C0D4 1074 aa4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 NOP58Q9Y2X3 529 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-212ENST00000474059 USP19O94966 1318 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 hCG_2014768A0A024R1R8 64 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 LOC102723971A0A1B0GUV8 181 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 TRIM43BA6NCK2 446 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 MBD3L4A6NDZ8 208 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 MBD3L3A6NE82 208 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 PPM1GO15355 546 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 AKAP10O43572 662 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 PLGP00747 810 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 PF4V1P10720 104 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 FGF3P11487 239 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 IL1R1P14778 569 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 ALDH7A1P49419 539 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 AGFG1P52594 562 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 COPAP53621 1224 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 IGBP1P78318 339 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 RAB32Q13637 225 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 KEAP1Q14145 624 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 C9orf50Q5SZB4 431 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 B4GALNT4Q76KP1 1039 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 ZNF329Q86UD4 541 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 SPATA2LQ8IUW3 424 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 ANKRD13AQ8IZ07 590 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 TRIM43Q96BQ3 446 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 TUBB6Q9BUF5 446 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 SAP30LQ9HAJ7 183 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 USP29Q9HBJ7 922 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 MOV10Q9HCE1 1003 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 A1CFQ9NQ94 594 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 DECR2Q9NUI1 292 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 ZSCAN32Q9NX65 697 aa4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 TRIP12Q14669 1992 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-212ENST00000474059 A0A1W2PPL8 197 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 RGS10O43665 173 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 TBC1D4O60343 1298 aa4□□□□□ -1.77
CCDC88A-212ENST00000474059 ST6GAL1P15907 406 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms