RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SYDE1Q6ZW31 735 aaPredicted RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 CYP4V2Q6ZWL3 525 aaPredicted RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 KLHL7Q8IXQ5 586 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 IFT20Q8IY31 132 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 VPS52Q8N1B4 723 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 PRELID2Q8N945 189 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 EIF1ADQ8N9N8 165 aaKnown RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 ATAD1Q8NBU5 361 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 RAPGEF5Q92565 580 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 HSPH1Q92598 858 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 SLCO2A1Q92959 643 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 PEBP4Q96S96 227 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 SEPT5Q99719 369 aaPredicted RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 CLSTN3Q9BQT9 956 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 ZNF670Q9BS34 389 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 LRRC1Q9BTT6 524 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 SNRNP25Q9BV90 132 aaKnown RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 MAK16Q9BXY0 300 aaKnown RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 PARD6BQ9BYG5 372 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 DDX47Q9H0S4 455 aaKnown RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 RAB17Q9H0T7 212 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 OLA1Q9NTK5 396 aaKnown RBP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.36□□□□□ -0.27
VPS13D-205ENST00000473099 CLIC5Q9NZA1 410 aa13.36□□□□□ -0.27
VPS13D-205ENST00000473099 RANBP2P49792 3224 aaKnown RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 SHROOM3Q8TF72 1996 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 C3orf70A6NLC5 250 aaPredicted RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 PI4K2BG5E9Z4 385 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 FYNP06241 537 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 CTSAP10619 480 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 ATF2P15336 505 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 ZFXP17010 805 aaPredicted RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 COILP38432 576 aaPredicted RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 ARSEP51690 589 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 EPHB4P54760 987 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 UBE3AQ05086 875 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 DUSP4Q13115 394 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 DDR2Q16832 855 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 EFHC2Q5JST6 749 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 KCNT1Q5JUK3 1230 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 SH3PXD2AQ5TCZ1 1133 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 RASIP1Q5U651 963 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 SYPL2Q5VXT5 272 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 MSANTD2Q6P1R3 559 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 DRICH1Q6PGQ1 229 aaPredicted RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 CCDC137Q6PK04 289 aaKnown RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 HFE2Q6ZVN8 426 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 BBS12Q6ZW61 710 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 ADAT2Q7Z6V5 191 aaKnown RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 PDZD8Q8NEN9 1154 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 SCAMP5Q8TAC9 235 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 SLC7A14Q8TBB6 771 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 RNF139Q8WU17 664 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 OVCA2Q8WZ82 227 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 NDRG1Q92597 394 aaKnown RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 CDK5RAP1Q96SZ6 601 aaKnown RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 TTLL2Q9BWV7 592 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 CALN1Q9BXU9 219 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 ZBP1Q9H171 429 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 SMOC2Q9H3U7 446 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 FAM204AQ9H8W3 233 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 RXFP1Q9HBX9 757 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 TLR8Q9NR97 1041 aaKnown RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 KLHL11Q9NVR0 708 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 DDIT4Q9NX09 232 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 CXXC1Q9P0U4 656 aaPredicted RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 AP4E1Q9UPM8 1137 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 NAALADL1Q9UQQ1 740 aa13.35□□□□□ -0.27
VPS13D-205ENST00000473099 UTP11Q9Y3A2 253 aaKnown RBP13.35□□□□□ -0.27
VPS13D-205ENST00000473099 C2CD2LO14523 706 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 RAD51CO43502 376 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 HEXIM1O94992 359 aaKnown RBP13.34□□□□□ -0.27
VPS13D-205ENST00000473099 VNN2O95498 520 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 CSH1P0DML2 217 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 CSH2P0DML3 217 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 H2AFXP16104 143 aaPredicted RBP13.34□□□□□ -0.27
VPS13D-205ENST00000473099 SYN1P17600 705 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 ELF1P32519 619 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 ARL4AP40617 200 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 RABGGTBP53611 331 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 DR1Q01658 176 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 SCAPQ12770 1279 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 MTA1Q13330 715 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 PLD1Q13393 1074 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 NNTQ13423 1086 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 DPYSL3Q14195 570 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 BRMS1LQ5PSV4 323 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 OTUD1Q5VV17 481 aaPredicted RBP13.34□□□□□ -0.27
VPS13D-205ENST00000473099 KAZNQ674X7 775 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 CCDC105Q8IYK2 499 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 ZNF276Q8N554 614 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.34□□□□□ -0.27
VPS13D-205ENST00000473099 HNRNPLLQ8WVV9 542 aaKnown RBP13.34□□□□□ -0.27
VPS13D-205ENST00000473099 TSC1Q92574 1164 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 FBXO32Q969P5 355 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 SAMD11Q96NU1 681 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 SERPINB11Q96P15 392 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 HEMGNQ9BXL5 484 aa13.34□□□□□ -0.27
VPS13D-205ENST00000473099 DCLK3Q9C098 648 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms