RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 NUDT5Q9UKK9 219 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 MAN1B1Q9UKM7 699 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 HCN2Q9UL51 889 aa17.15■□□□□ 0.34
COL9A3-208ENST00000469802 PMM2O15305 246 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 STC2O76061 302 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 BMP6P22004 513 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 PLA2G4AP47712 749 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 LIMK1P53667 647 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 SF3A2Q15428 464 aaKnown RBP17.14■□□□□ 0.33
COL9A3-208ENST00000469802 ELF2Q15723 593 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 CCDC6Q16204 474 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 PREPLQ4J6C6 727 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-208ENST00000469802 EOGTQ5NDL2 527 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 TTI2Q6NXR4 508 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 TADA2BQ86TJ2 420 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 C11orf74Q86VG3 221 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 ANKRD52Q8NB46 1076 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 CEP63Q96MT8 703 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 CDK5RAP1Q96SZ6 601 aaKnown RBP17.14■□□□□ 0.33
COL9A3-208ENST00000469802 METTL14Q9HCE5 456 aaKnown RBP17.14■□□□□ 0.33
COL9A3-208ENST00000469802 ZDHHC4Q9NPG8 344 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 STARD13Q9Y3M8 1113 aa17.14■□□□□ 0.33
COL9A3-208ENST00000469802 CKAP5Q14008 2032 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 DCDC2BA2VCK2 349 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 NEDD8-MDP1E9PL57 170 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 TRIM24O15164 1050 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 RHOBTB1O94844 696 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 RALAP11233 206 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 TYRP14679 529 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 BCKDHBP21953 392 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 PPP1R2P41236 205 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 FMO5P49326 533 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 BCAT1P54687 386 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 STIM1Q13586 685 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 USP39Q53GS9 565 aaKnown RBP17.13■□□□□ 0.33
COL9A3-208ENST00000469802 C10orf76Q5T2E6 689 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 BHLHA9Q7RTU4 235 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 ZNF513Q8N8E2 541 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-208ENST00000469802 P2RY11Q96G91 374 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 BBS2Q9BXC9 721 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 VPS45Q9NRW7 570 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 RXFP3Q9NSD7 469 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 DNAJC17Q9NVM6 304 aaKnown RBP17.13■□□□□ 0.33
COL9A3-208ENST00000469802 TSPAN16Q9UKR8 245 aa17.13■□□□□ 0.33
COL9A3-208ENST00000469802 MUC22E2RYF6 1773 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-208ENST00000469802 BCLAF3A2AJT9 711 aaKnown RBP17.12■□□□□ 0.33
COL9A3-208ENST00000469802 TBC1D3BA6NDS4 549 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 PPP1R3GB7ZBB8 358 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 TULP2O00295 520 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 XPO1O14980 1071 aaKnown RBP17.12■□□□□ 0.33
COL9A3-208ENST00000469802 ALDH1A2O94788 518 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 KLKB1P03952 638 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 TBXAS1P24557 533 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-208ENST00000469802 P2RY2P41231 377 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 YWHAEP62258 255 aaKnown RBP17.12■□□□□ 0.33
COL9A3-208ENST00000469802 GOLGA7BQ2TAP0 167 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 PM20D1Q6GTS8 502 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 GRAMD4Q6IC98 578 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 MIB1Q86YT6 1006 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 ARHGAP18Q8N392 663 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 SMOC1Q9H4F8 434 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 CD248Q9HCU0 757 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 POLMQ9NP87 494 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-208ENST00000469802 WDR35Q9P2L0 1181 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 CNOT1A5YKK6 2376 aaKnown RBP17.12■□□□□ 0.33
COL9A3-208ENST00000469802 PI4KAP42356 2102 aa17.12■□□□□ 0.33
COL9A3-208ENST00000469802 O00370 1275 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 PENKP01210 267 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-208ENST00000469802 GBP1P32455 592 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 TKTL1P51854 596 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 COG7P83436 770 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 PDE4CQ08493 712 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 BST2Q10589 180 aaKnown RBP17.11■□□□□ 0.33
COL9A3-208ENST00000469802 MORC3Q14149 939 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 AASDHQ4L235 1098 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-208ENST00000469802 PKDCCQ504Y2 493 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 SGO2Q562F6 1265 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 ISM2Q6H9L7 571 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 TPGS1Q6ZTW0 290 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 TRMT11Q7Z4G4 463 aaKnown RBP17.11■□□□□ 0.33
COL9A3-208ENST00000469802 C12orf50Q8NA57 414 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-208ENST00000469802 LMO3Q8TAP4 145 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 XPO6Q96QU8 1125 aaKnown RBP17.11■□□□□ 0.33
COL9A3-208ENST00000469802 RASAL2Q9UJF2 1139 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 FBXO10Q9UK96 956 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 INVSQ9Y283 1065 aa17.11■□□□□ 0.33
COL9A3-208ENST00000469802 A0A1W2PQF6 199 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 TCRBV21S2A2A0A5A6 115 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 PRRT4C9JH25 899 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 TM4SF5O14894 197 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 GADD45BO75293 160 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-208ENST00000469802 ZBED1O96006 694 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 CISD3P0C7P0 127 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 SLC8A3P57103 927 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 YWHAGP61981 247 aaKnown RBP eCLIP17.1■□□□□ 0.33
COL9A3-208ENST00000469802 CREB5Q02930 508 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 EFEMP1Q12805 493 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 MAP7D1Q3KQU3 841 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 EGFLAMQ63HQ2 1017 aa17.1■□□□□ 0.33
COL9A3-208ENST00000469802 TCEAL6Q6IPX3 200 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms