RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 MDM4O15151 490 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 SLC16A3O15427 465 aaKnown RBP17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 CACNG3O60359 315 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 SMC2O95347 1197 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 CAVIN2O95810 425 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 RALAP11233 206 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 BCKDHBP21953 392 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 RAD23BP54727 409 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 FKBP3Q00688 224 aaKnown RBP17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 C10orf76Q5T2E6 689 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 STPG1Q5TH74 334 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 GRAMD4Q6IC98 578 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 SCD5Q86SK9 330 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 ZNF513Q8N8E2 541 aaPredicted RBP17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 ENGASEQ8NFI3 743 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 TATDN2Q93075 761 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 TMEM176AQ96HP8 235 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 XPO6Q96QU8 1125 aaKnown RBP17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 CDK5RAP1Q96SZ6 601 aaKnown RBP17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 GTPBP4Q9BZE4 634 aaKnown RBP17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 UBXN6Q9BZV1 441 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 ZDHHC4Q9NPG8 344 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 DNAJC17Q9NVM6 304 aaKnown RBP17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 CLIC5Q9NZA1 410 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 WDR35Q9P2L0 1181 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 NUDT5Q9UKK9 219 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 COQ4Q9Y3A0 265 aa17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 MYO18AQ92614 2054 aaKnown RBP17.44■□□□□ 0.38
CCDC28B-204ENST00000469003 PLXND1Q9Y4D7 1925 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 NEDD8-MDP1E9PL57 170 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 TM4SF5O14894 197 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 TYRP14679 529 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 P2RY2P41231 377 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 NUCB2P80303 420 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 BECN1Q14457 450 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 CBWD6Q4V339 395 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 DCAF17Q5H9S7 520 aaPredicted RBP17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 CBWD3Q5JTY5 395 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 CBWD5Q5RIA9 395 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 TCERG1LQ5VWI1 586 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 ARHGAP17Q68EM7 881 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 ANKRD40Q6AI12 368 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 TCEAL6Q6IPX3 200 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 Q6ZNB5 142 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 TPGS1Q6ZTW0 290 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 SPATA20Q8TB22 786 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 TCEAL3Q969E4 200 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 SMARCE1Q969G3 411 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 SPACA7Q96KW9 195 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 ARID3AQ99856 593 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 BBS2Q9BXC9 721 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 BCCIPQ9P287 314 aaKnown RBP eCLIP17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 STARD13Q9Y3M8 1113 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 FAM208BQ5VWN6 2430 aa17.43■□□□□ 0.38
CCDC28B-204ENST00000469003 TCRBV21S2A2A0A5A6 115 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 TRIM24O15164 1050 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 STC2O76061 302 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 KCNA4P22459 653 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 PMS1P54277 932 aaKnown RBP17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 LRRC63Q05C16 580 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 RAB41Q5JT25 222 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 CYP2U1Q7Z449 544 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 HMGB4Q8WW32 186 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 RLN3Q8WXF3 142 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 TIGD1Q96MW7 591 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 HOOK1Q9UJC3 728 aaKnown RBP17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 HCN2Q9UL51 889 aa17.42■□□□□ 0.38
CCDC28B-204ENST00000469003 NTSR1P30989 418 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 DHPSP49366 369 aaPredicted RBP17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 SLC8A3P57103 927 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 COG7P83436 770 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 BYSLQ13895 437 aaKnown RBP17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 MAP7D1Q3KQU3 841 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 RNF43Q68DV7 783 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 PIGZQ86VD9 579 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 MIB1Q86YT6 1006 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 PGBD3Q8N328 593 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 ARHGAP18Q8N392 663 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 ANKRD52Q8NB46 1076 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 ERCC4Q92889 916 aaPredicted RBP17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 EDEM2Q9BV94 578 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 ARMCX3Q9UH62 379 aaPredicted RBP17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 RASAL2Q9UJF2 1139 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 ZNF510Q9Y2H8 683 aa17.41■□□□□ 0.38
CCDC28B-204ENST00000469003 TRIM49BA6NDI0 452 aa17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 HOXB2P14652 356 aa17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 DGKGP49619 791 aa17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 YWHAEP62258 255 aaKnown RBP17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 CUL2Q13617 745 aa17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 EGFLAMQ63HQ2 1017 aa17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 LPCAT2Q7L5N7 544 aa17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 SLC35C1Q96A29 364 aa17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 DCLK3Q9C098 648 aa17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 CIZ1Q9ULV3 898 aaPredicted RBP17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 TNRC6BQ9UPQ9 1833 aaKnown RBP17.4■□□□□ 0.38
CCDC28B-204ENST00000469003 CEP295Q9C0D2 2601 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 LNP1A1A4G5 178 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 KHNYNO15037 678 aaKnown RBP17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 MAP3K13O43283 966 aa17.39■□□□□ 0.37
CCDC28B-204ENST00000469003 KLKB1P03952 638 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms