RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PCBP2Q15366 365 aaKnown RBP eCLIP5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 FLYWCH1Q4VC44 716 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 CFAP58Q5T655 872 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 BEND5Q7L4P6 421 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 KDELC2Q7Z4H8 507 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 GALNTL5Q7Z4T8 443 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 ADGRG5Q8IZF4 528 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 B3GALNT2Q8NCR0 500 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 SLC17A8Q8NDX2 589 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 SLC35G2Q8TBE7 412 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 ANKRD49Q8WVL7 239 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 SNX19Q92543 992 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 ARHGEF2Q92974 986 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 SARAFQ96BY9 339 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 CNDP2Q96KP4 475 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 JAKMIP1Q96N16 626 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 TAAR9Q96RI9 348 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 TIMP4Q99727 224 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 GPATCH1Q9BRR8 931 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 VPS45Q9NRW7 570 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 HPF1Q9NWY4 346 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 DKK3Q9UBP4 350 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 DUSP12Q9UNI6 340 aa5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 COL3A1P02461 1466 aaPredicted RBP5.3□□□□□ -1.56
CCDC88A-210ENST00000468534 IL16Q14005 1332 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 ATAD2BQ9ULI0 1458 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 CCDC195A0A1B0GUA6 201 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 AKR1B15C9JRZ8 316 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 F5H0A9 414 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 EIF3FO00303 357 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 PROM1O43490 865 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 CTNND1O60716 968 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 USO1O60763 962 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 PQBP1O60828 265 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 NDUFS2O75306 463 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 E2F6O75461 281 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 SUN1O94901 812 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 MT-CO1P00395 513 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 SLC3A2P08195 630 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 VCAM1P19320 739 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 CDC42EP1Q00587 391 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 AKAP17AQ02040 695 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 CDC16Q13042 620 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 DYRK1AQ13627 763 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 SEMA3AQ14563 771 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 ODF1Q14990 250 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 RASA2Q15283 850 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 ASIC2Q16515 512 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 TXNRD1Q16881 649 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 C5orf22Q49AR2 442 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 AMOTQ4VCS5 1084 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 KRTCAP3Q53RY4 240 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 DGKKQ5KSL6 1271 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 PGM2L1Q6PCE3 622 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 CTR9Q6PD62 1173 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 SLC9B2Q86UD5 537 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 RASAL3Q86YV0 1011 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 TMTC1Q8IUR5 882 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 OR2C3Q8N628 320 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 TMIEQ8NEW7 156 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 IFI44Q8TCB0 444 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 PGBD1Q96JS3 809 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF778Q96MU6 729 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 TBCBQ99426 244 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 STK31Q9BXU1 1019 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 DACT1Q9NYF0 836 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 GGA3Q9NZ52 723 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 LAMP5Q9UJQ1 280 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 TUBD1Q9UJT1 453 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 COG5Q9UP83 839 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 C2CD2Q9Y426 696 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 NR2E3Q9Y5X4 410 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 WNT6Q9Y6F9 365 aa5.29□□□□□ -1.56
CCDC88A-210ENST00000468534 WDR91A4D1P6 747 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 PI4K2BG5E9Z4 385 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 KLHL41O60662 606 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 GUCA1CO95843 209 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 APOA4P06727 396 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 DHRS4L1P0CG22 281 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 THEGLP0DJG4 465 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 GZMAP12544 262 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 PPM1AP35813 382 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 ANXA11P50995 505 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 KRT85P78386 507 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 IL10RAQ13651 578 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 WSCD2Q2TBF2 565 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 CCDC38Q502W7 563 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 KDELC1Q6UW63 502 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 GADL1Q6ZQY3 521 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 RAPH1Q70E73 1250 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF365Q70YC5 407 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 TBC1D21Q8IYX1 336 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 CFAP52Q8N1V2 620 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF619Q8N2I2 560 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 PDPRQ8NCN5 879 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 ZNF540Q8NDQ6 660 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 SCARB1Q8WTV0 552 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 USP6NLQ92738 828 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 DPF1Q92782 380 aa5.28□□□□□ -1.56
CCDC88A-210ENST00000468534 HDAC10Q969S8 669 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms