RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 USP6NLQ92738 828 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 LENG1Q96BZ8 264 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-217ENST00000466159 C11orf84Q9BUA3 381 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-217ENST00000466159 KLC2Q9H0B6 622 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 RNF39Q9H2S5 420 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 PLAC1Q9HBJ0 212 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 NPHS2Q9NP85 383 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 CYLDQ9NQC7 956 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 MTMR10Q9NXD2 777 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 CNTN3Q9P232 1028 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 MORF4L1Q9UBU8 362 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 MFHAS1Q9Y4C4 1052 aa9.29□□□□□ -0.92
SYNE1-217ENST00000466159 MYO18AQ92614 2054 aaKnown RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 DOCK3Q8IZD9 2030 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 SMIM28A0A1B0GU29 152 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 CFAP69A5D8W1 941 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 RRN3P2A6NIE6 340 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 CYP2C9P11712 490 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 DARSP14868 501 aaKnown RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 TARSP26639 723 aaKnown RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 GNL1P36915 607 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 BST2Q10589 180 aaKnown RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 FBXO47Q5MNV8 452 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 IQSEC1Q6DN90 963 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 VSIG1Q86XK7 387 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 ZDHHC17Q8IUH5 632 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 PYROXD2Q8N2H3 581 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 PPM1NQ8N819 430 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 ANKRD52Q8NB46 1076 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 DNAJB3Q8WWF6 145 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 ALKBH8Q96BT7 664 aaKnown RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 FAM111AQ96PZ2 611 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 TMEM237Q96Q45 408 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 MANSC1Q9H8J5 431 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 POPDC2Q9HBU9 364 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 ZC3H7BQ9UGR2 993 aaKnown RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 AP4E1Q9UPM8 1137 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 PIN4Q9Y237 131 aaKnown RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 TTLL3Q9Y4R7 772 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 A6NJR5 290 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 KPNA7A9QM74 516 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 PIRO00625 290 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 UGT1A9O60656 530 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 DESP17661 470 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 PTPN9P43378 593 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 GTF2A2P52657 109 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 SOX4Q06945 474 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 RIPK1Q13546 671 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 DPYSL2Q16555 572 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 KCNT2Q6UVM3 1135 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 SLC26A9Q7LBE3 791 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 APBB1IPQ7Z5R6 666 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 LRRC6Q86X45 466 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 NETO2Q8NC67 525 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 MAGEC3Q8TD91 643 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 SLC2A14Q8TDB8 520 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 CENPIQ92674 756 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 KCTD15Q96SI1 283 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 SYT17Q9BSW7 474 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 VPS11Q9H270 941 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 UGT1A7Q9HAW7 530 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 UGT1A10Q9HAW8 530 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 UGT1A8Q9HAW9 530 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 SMYD2Q9NRG4 433 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 HAO1Q9UJM8 370 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 DCTN4Q9UJW0 460 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 UBQLN1Q9UMX0 589 aaKnown RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 CLEC11AQ9Y240 323 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-217ENST00000466159 L3MBTL1Q9Y468 752 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 NUMBLQ9Y6R0 609 aa9.28□□□□□ -0.92
SYNE1-217ENST00000466159 NRCAMQ92823 1304 aa9.27□□□□□ -0.92
SYNE1-217ENST00000466159 SLC15A5A6NIM6 579 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 TRIM49D1C9J1S8 452 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 F5H423 210 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SPAG6O75602 509 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 AMPD1P23109 780 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 ALDH3A1P30838 453 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 GRIA1P42261 906 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SKIV2L2P42285 1042 aaKnown RBP9.27□□□□□ -0.93
SYNE1-217ENST00000466159 ETV4P43268 484 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 NEK3P51956 506 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 BCAT1P54687 386 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SNX16P57768 344 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SLC18A2Q05940 514 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SLC45A4Q5BKX6 768 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 CDHR3Q6ZTQ4 885 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 ZNF534Q76KX8 674 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 PLEKHH3Q7Z736 793 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SLC26A11Q86WA9 606 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 CRYBG2Q8N1P7 616 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 MPP5Q8N3R9 675 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 RFWD2Q8NHY2 731 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 TTC17Q96AE7 1141 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 APOPT1Q96IL0 206 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 CSPG4P5Q96PW8 444 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 PNPLA8Q9NP80 782 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SLC5A4Q9NY91 659 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 KANSL3Q9P2N6 904 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SLC45A1Q9Y2W3 748 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms