RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 ZC3H10Q96K80 434 aaKnown RBP13.2□□□□□ -0.3
HDAC4-207ENST00000461113 PNPLA8Q9NP80 782 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 SIX2Q9NPC8 291 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 TRPM5Q9NZQ8 1165 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 KLK13Q9UKR3 277 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 CNTN6Q9UQ52 1028 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 SIK3Q9Y2K2 1263 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 MSRB2Q9Y3D2 182 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 FHOD1Q9Y613 1164 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 NOTCH4Q99466 2003 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 SDK1Q7Z5N4 2213 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 HEPACAM2A8MVW5 462 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 SPECC1L-ADORA2AF8WAN1 911 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 M0QYV0 167 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 FOXN3O00409 490 aaPredicted RBP13.19□□□□□ -0.3
HDAC4-207ENST00000461113 TPM1P09493 284 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 SETSIPP0DME0 302 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 BRD2P25440 801 aaKnown RBP13.19□□□□□ -0.3
HDAC4-207ENST00000461113 DDX6P26196 483 aaKnown RBP eCLIP13.19□□□□□ -0.3
HDAC4-207ENST00000461113 EPHA5P54756 1037 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 APBA1Q02410 837 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 CREB5Q02930 508 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 BST2Q10589 180 aaKnown RBP13.19□□□□□ -0.3
HDAC4-207ENST00000461113 NR1I3Q14994 352 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 PON2Q15165 354 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 PKN3Q6P5Z2 889 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 LCLAT1Q6UWP7 414 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 APTXQ7Z2E3 356 aaKnown RBP13.19□□□□□ -0.3
HDAC4-207ENST00000461113 YAF2Q8IY57 180 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 HS6ST3Q8IZP7 471 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 STKLD1Q8NE28 680 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 DEFB124Q8NES8 71 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 ZNF397Q8NF99 534 aaPredicted RBP13.19□□□□□ -0.3
HDAC4-207ENST00000461113 ZSCAN18Q8TBC5 510 aaPredicted RBP13.19□□□□□ -0.3
HDAC4-207ENST00000461113 FBXO32Q969P5 355 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 TRMT2BQ96GJ1 504 aaKnown RBP13.19□□□□□ -0.3
HDAC4-207ENST00000461113 NOX5Q96PH1 765 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 KCNK16Q96T55 309 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 UBXN6Q9BZV1 441 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 DUSP15Q9H1R2 295 aaPredicted RBP13.19□□□□□ -0.3
HDAC4-207ENST00000461113 TRPV4Q9HBA0 871 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 LRRC4Q9HBW1 653 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 CSNK1G1Q9HCP0 422 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 NLRC4Q9NPP4 1024 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 IFNKQ9P0W0 207 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 TSPAN16Q9UKR8 245 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 GPSM3Q9Y4H4 160 aa13.19□□□□□ -0.3
HDAC4-207ENST00000461113 GREB1Q4ZG55 1949 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 CCDC163A0A0D9SF12 145 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 A0A1W2PRU2 124 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 LNP1A1A4G5 178 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 RNF225M0QZC1 329 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-207ENST00000461113 O00370 1275 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 CYP26A1O43174 497 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 TEX33O43247 280 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 MOSPD3O75425 235 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 ABL1P00519 1130 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 GJA1P17302 382 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 CTHP32929 405 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 ZNF132P52740 706 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 SLC5A3P53794 718 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 CCINQ13939 588 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 CLEC20AQ6ZU45 233 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 PAQR9Q6ZVX9 377 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 FAM71AQ8IYT1 594 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 SYNPOQ8N3V7 929 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 OVCA2Q8WZ82 227 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 RSPRY1Q96DX4 576 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 MYRFLQ96LU7 910 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 NAP1L5Q96NT1 182 aaPredicted RBP13.18□□□□□ -0.3
HDAC4-207ENST00000461113 SMOQ99835 787 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 GANQ9H2C0 597 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 TMEM9BQ9NQ34 198 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.18□□□□□ -0.3
HDAC4-207ENST00000461113 SLC8A2Q9UPR5 921 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.18□□□□□ -0.3
HDAC4-207ENST00000461113 COL4A2P08572 1712 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 LAMA5O15230 3695 aa13.18□□□□□ -0.3
HDAC4-207ENST00000461113 BCLAF3A2AJT9 711 aaKnown RBP13.17□□□□□ -0.3
HDAC4-207ENST00000461113 F8VZ95 297 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 DPYSL4O14531 572 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 XPO1O14980 1071 aaKnown RBP13.17□□□□□ -0.3
HDAC4-207ENST00000461113 CHADO15335 359 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 HMGA1P17096 107 aaKnown RBP13.17□□□□□ -0.3
HDAC4-207ENST00000461113 SOX5P35711 763 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 KLK7P49862 253 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 TAF10Q12962 218 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 ELF2Q15723 593 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 MEA1Q16626 185 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 COL28A1Q2UY09 1125 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 UAP1L1Q3KQV9 507 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 GPR158Q5T848 1215 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 TADA2BQ86TJ2 420 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 RALGPS2Q86X27 583 aaPredicted RBP13.17□□□□□ -0.3
HDAC4-207ENST00000461113 PROSER1Q86XN7 944 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 SIX6OS1Q8N1H7 587 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 ARHGAP18Q8N392 663 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 MSANTD4Q8NCY6 345 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 UBA3Q8TBC4 463 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 ZNF606Q8WXB4 792 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms