RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 AXIN1O15169 862 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 CACNG3O60359 315 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 RPP40O75818 363 aaKnown RBP12.64□□□□□ -0.39
USP40-210ENST00000454354 FGFR1OPO95684 399 aaKnown RBP12.64□□□□□ -0.39
USP40-210ENST00000454354 ZBED1O96006 694 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 CCDC192P0DO97 292 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 ZNF132P52740 706 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 YWHAGP61981 247 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP40-210ENST00000454354 STILQ15468 1287 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 CAMK4Q16566 473 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 C2orf27AQ580R0 203 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 BTBD8Q5XKL5 378 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 CEP68Q76N32 757 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 RASSF3Q86WH2 238 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 MIB1Q86YT6 1006 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 ARHGEF19Q8IW93 802 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 SFTPA1Q8IWL2 248 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 FAM160A2Q8N612 972 aaPredicted RBP12.64□□□□□ -0.39
USP40-210ENST00000454354 TERB1Q8NA31 727 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 IL17RCQ8NAC3 791 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 EHBP1Q8NDI1 1231 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 TFAP2BQ92481 460 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 KAT5Q92993 513 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 MED15Q96RN5 788 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 ULBP1Q9BZM6 244 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 DEC1Q9P2X7 70 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP40-210ENST00000454354 ZNF510Q9Y2H8 683 aa12.64□□□□□ -0.39
USP40-210ENST00000454354 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP40-210ENST00000454354 RNF225M0QZC1 329 aaPredicted RBP12.63□□□□□ -0.39
USP40-210ENST00000454354 COG7P83436 770 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 LMNB2Q03252 620 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 ADIGQ0VDE8 80 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 CNGA2Q16280 664 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 CRY1Q16526 586 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 ANO4Q32M45 955 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 CLEC17AQ6ZS10 378 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 CACNA2D4Q7Z3S7 1137 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 RBBP8NLQ8NC74 664 aaPredicted RBP12.63□□□□□ -0.39
USP40-210ENST00000454354 TSTD1Q8NFU3 115 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 KCNV2Q8TDN2 545 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 RMDN1Q96DB5 314 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 LOXL4Q96JB6 756 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 ZC3H10Q96K80 434 aaKnown RBP12.63□□□□□ -0.39
USP40-210ENST00000454354 CNOT6LQ96LI5 555 aaKnown RBP12.63□□□□□ -0.39
USP40-210ENST00000454354 ZSWIM1Q9BR11 485 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 DCLK3Q9C098 648 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 INTS2Q9H0H0 1204 aaKnown RBP12.63□□□□□ -0.39
USP40-210ENST00000454354 CLSTN2Q9H4D0 955 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 LRRC4Q9HBW1 653 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 CNGB3Q9NQW8 809 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 OLA1Q9NTK5 396 aaKnown RBP12.63□□□□□ -0.39
USP40-210ENST00000454354 DLL3Q9NYJ7 618 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 WDR35Q9P2L0 1181 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 RASAL2Q9UJF2 1139 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 CNTN6Q9UQ52 1028 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 PCDHB4Q9Y5E5 795 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 MUC22E2RYF6 1773 aaPredicted RBP12.63□□□□□ -0.39
USP40-210ENST00000454354 SPTBN2O15020 2390 aa12.63□□□□□ -0.39
USP40-210ENST00000454354 PI4KAP42356 2102 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 PRR5-ARHGAP8B1AHC4 643 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 NEDD8-MDP1E9PL57 170 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 SGK1O00141 431 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 EPN2O95208 641 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 KLF8O95600 359 aaPredicted RBP12.62□□□□□ -0.39
USP40-210ENST00000454354 KLKB1P03952 638 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 TYRP14679 529 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 HNRNPLP14866 589 aaKnown RBP eCLIP12.62□□□□□ -0.39
USP40-210ENST00000454354 DGKEP52429 567 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 ARHGAP8P85298 464 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 SPEM2Q0P670 501 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 EFEMP1Q12805 493 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 CSRP2Q16527 193 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 MEA1Q16626 185 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 GRAMD4Q6IC98 578 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 TMEM92Q6UXU6 159 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 RSRC2Q7L4I2 434 aaKnown RBP12.62□□□□□ -0.39
USP40-210ENST00000454354 RRAGAQ7L523 313 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 ERMP1Q7Z2K6 904 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 KBTBD6Q86V97 674 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 FAM217AQ8IXS0 508 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 ALLCQ8N6M5 410 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 NAT16Q8N8M0 369 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 MLKLQ8NB16 471 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 TXNDC5Q8NBS9 432 aaKnown RBP12.62□□□□□ -0.39
USP40-210ENST00000454354 UBA3Q8TBC4 463 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 SLC35F5Q8WV83 523 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 KREMEN1Q96MU8 473 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 XPO6Q96QU8 1125 aaKnown RBP12.62□□□□□ -0.39
USP40-210ENST00000454354 BBS2Q9BXC9 721 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 DNAJC17Q9NVM6 304 aaKnown RBP12.62□□□□□ -0.39
USP40-210ENST00000454354 MARCH2Q9P0N8 246 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 FBXO10Q9UK96 956 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 STRIP2Q9ULQ0 834 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 USP18Q9UMW8 372 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 STARD13Q9Y3M8 1113 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 NCOR2Q9Y618 2525 aa12.62□□□□□ -0.39
USP40-210ENST00000454354 CNOT1A5YKK6 2376 aaKnown RBP12.61□□□□□ -0.39
USP40-210ENST00000454354 TBC1D3BA6NDS4 549 aa12.61□□□□□ -0.39
USP40-210ENST00000454354 M0QYV0 167 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms