RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 CEP85Q6P2H3 762 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 PTCHD4Q6ZW05 846 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 MYLK4Q86YV6 388 aaPredicted RBP4.68□□□□□ -1.66
USP40-209ENST00000452724 ZNF527Q8NB42 609 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 SEMA6DQ8NFY4 1073 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 SUN3Q8TAQ9 357 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 IPO4Q8TEX9 1081 aaKnown RBP4.68□□□□□ -1.66
USP40-209ENST00000452724 POF1BQ8WVV4 589 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 GRAMD1AQ96CP6 724 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 FLRT1Q9NZU1 646 aa4.68□□□□□ -1.66
USP40-209ENST00000452724 OR2W5A6NFC9 320 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 ZNF213O14771 459 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 PDE8BO95263 885 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 VIPP01282 170 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 FGAP02671 866 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 CELA2AP08217 269 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 MYCLP12524 364 aaPredicted RBP4.67□□□□□ -1.66
USP40-209ENST00000452724 FPR3P25089 353 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 CYP4F2P78329 520 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 CHAF1AQ13111 956 aaPredicted RBP4.67□□□□□ -1.66
USP40-209ENST00000452724 C10orf62Q5T681 223 aaPredicted RBP4.67□□□□□ -1.66
USP40-209ENST00000452724 PGBD2Q6P3X8 592 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 GGT6Q6P531 493 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 GLCCI1Q86VQ1 547 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 ENAHQ8N8S7 591 aaPredicted RBP4.67□□□□□ -1.66
USP40-209ENST00000452724 NGDNQ8NEJ9 315 aaKnown RBP4.67□□□□□ -1.66
USP40-209ENST00000452724 DPF1Q92782 380 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 VPS50Q96JG6 964 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 WDR24Q96S15 920 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 THAP7Q9BT49 309 aaPredicted RBP4.67□□□□□ -1.66
USP40-209ENST00000452724 SEMA4CQ9C0C4 833 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 WDR26Q9H7D7 661 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 SNX15Q9NRS6 342 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 IGSF9Q9P2J2 1179 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 LPAR3Q9UBY5 353 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 ADAM21Q9UKJ8 722 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 CA14Q9ULX7 337 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 AOX1Q06278 1338 aa4.67□□□□□ -1.66
USP40-209ENST00000452724 POLR2AP24928 1970 aaKnown RBP4.66□□□□□ -1.66
USP40-209ENST00000452724 GOLGA6L3A6NEY3 463 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 WIPF3A6NGB9 483 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 TARM1B6A8C7 271 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 ZSCAN9O15535 394 aaPredicted RBP4.66□□□□□ -1.66
USP40-209ENST00000452724 TMPRSS11DO60235 418 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 JTBO76095 146 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 WDR47O94967 919 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 SRGAP2BP0DMP2 458 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 TMEM225BP0DP42 221 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 MCM5P33992 734 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 PSG6Q00889 435 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 MTAPQ13126 283 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 ACOX1Q15067 660 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 DENND2CQ68D51 928 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 NAPRTQ6XQN6 538 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 RASGRP3Q8IV61 690 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 SFTPA1Q8IWL2 248 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 SCARB1Q8WTV0 552 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 DDB2Q92466 427 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 MACROD1Q9BQ69 325 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 C1QTNF7Q9BXJ2 289 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 MGAT4CQ9UBM8 478 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 ZNF70Q9UC06 446 aaPredicted RBP4.66□□□□□ -1.66
USP40-209ENST00000452724 DTNAQ9Y4J8 743 aa4.66□□□□□ -1.66
USP40-209ENST00000452724 WDR91A4D1P6 747 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 AQP12BA6NM10 295 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 PIP5K1BO14986 540 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 CBFA2T3O75081 653 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 SKAP2O75563 359 aaPredicted RBP4.65□□□□□ -1.67
USP40-209ENST00000452724 GLP2RO95838 553 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 ADRA1DP25100 572 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 CERS1P27544 350 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 PBX1P40424 430 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 DIO1P49895 249 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 ICA1Q05084 483 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 LMAN2Q12907 356 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 SPARCL1Q14515 664 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 PUM3Q15397 648 aaKnown RBP4.65□□□□□ -1.67
USP40-209ENST00000452724 RNASE12Q5GAN4 147 aaKnown RBP4.65□□□□□ -1.67
USP40-209ENST00000452724 GRHL2Q6ISB3 625 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 TLDC1Q6P9B6 456 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 KIRREL2Q6UWL6 708 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 P3H2Q8IVL5 708 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 TERB1Q8NA31 727 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 MMS19Q96T76 1030 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 PRPF18Q99633 342 aaKnown RBP4.65□□□□□ -1.67
USP40-209ENST00000452724 ARPC5LQ9BPX5 153 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 NUDT22Q9BRQ3 303 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 CIPCQ9C0C6 399 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 TMEM8AQ9HCN3 771 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 OBP2BQ9NPH6 170 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 NRIP3Q9NQ35 241 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 HELLSQ9NRZ9 838 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 SH3BP4Q9P0V3 963 aa4.65□□□□□ -1.67
USP40-209ENST00000452724 COL3A1P02461 1466 aaPredicted RBP4.64□□□□□ -1.67
USP40-209ENST00000452724 KAT6AQ92794 2004 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 LGALS16A8MUM7 142 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 PCDH17O14917 1159 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 NPC1O15118 1278 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 EXOC3O60645 756 aa4.64□□□□□ -1.67
USP40-209ENST00000452724 NPPBP16860 134 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms