RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ABL2P42684 1182 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 RBP5P82980 135 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 RAB6CQ53S08 254 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 XYLT1Q86Y38 959 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 GSTCDQ8NEC7 633 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 RNF157Q96PX1 679 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 TWNKQ96RR1 684 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 B3GNT5Q9BYG0 378 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 RAB6CQ9H0N0 254 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 SLC17A6Q9P2U8 582 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 TLK1Q9UKI8 766 aa12.29□□□□□ -0.44
MSH6-204ENST00000445503 AP1G2O75843 785 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 PROCP04070 461 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 ARL2P36404 184 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 COPAP53621 1224 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 DSG1Q02413 1049 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 MED21Q13503 144 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 ITGA9Q13797 1035 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 EML3Q32P44 896 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 Q3C1V9 767 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 KCNT2Q6UVM3 1135 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 DCLK2Q8N568 766 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 WDTC1Q8N5D0 677 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 ZNF398Q8TD17 642 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 ZNF184Q99676 751 aaPredicted RBP12.28□□□□□ -0.44
MSH6-204ENST00000445503 FRMD8P1Q9BZ68 369 aaPredicted RBP12.28□□□□□ -0.44
MSH6-204ENST00000445503 UNKQ9C0B0 810 aaKnown RBP12.28□□□□□ -0.44
MSH6-204ENST00000445503 GGA3Q9NZ52 723 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 C19orf81C9J6K1 198 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 MAGEB2O15479 319 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 MX2P20592 715 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 MLH1P40692 756 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 SATB1Q01826 763 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 GEN1Q17RS7 908 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 IRGCQ6NXR0 463 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 KDELC2Q7Z4H8 507 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 RNF148Q8N7C7 305 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 PHACTR1Q9C0D0 580 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 PDGFDQ9GZP0 370 aaPredicted RBP12.28□□□□□ -0.44
MSH6-204ENST00000445503 ELOVL4Q9GZR5 314 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 LRRC4Q9HBW1 653 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 YWHAZP63104 245 aaKnown RBP12.28□□□□□ -0.44
MSH6-204ENST00000445503 PEX6Q13608 980 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 HSDL1Q3SXM5 330 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 CDHR3Q6ZTQ4 885 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 CATSPER4Q7RTX7 472 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 GSDMBQ8TAX9 411 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 FAXDC2Q96IV6 333 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 SYT15Q9BQS2 421 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 CENPKQ9BS16 269 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 TMEM134Q9H6X4 195 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 MAN1C1Q9NR34 630 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 DPP3Q9NY33 737 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 MRPL42Q9Y6G3 142 aaKnown RBP12.28□□□□□ -0.44
MSH6-204ENST00000445503 RPS6KL1Q9Y6S9 549 aa12.28□□□□□ -0.44
MSH6-204ENST00000445503 CNTNAP2Q9UHC6 1331 aa12.27□□□□□ -0.44
MSH6-204ENST00000445503 MGAT1P26572 445 aa12.27□□□□□ -0.44
MSH6-204ENST00000445503 MAP7D1Q3KQU3 841 aa12.27□□□□□ -0.44
MSH6-204ENST00000445503 GJC2Q5T442 439 aaPredicted RBP12.27□□□□□ -0.44
MSH6-204ENST00000445503 UNC5BQ8IZJ1 945 aa12.27□□□□□ -0.44
MSH6-204ENST00000445503 DEFB107AQ8IZN7 70 aa12.27□□□□□ -0.44
MSH6-204ENST00000445503 ANKLE1Q8NAG6 615 aa12.27□□□□□ -0.44
MSH6-204ENST00000445503 ZNF669Q96BR6 464 aaPredicted RBP12.27□□□□□ -0.44
MSH6-204ENST00000445503 LRGUKQ96M69 825 aa12.27□□□□□ -0.44
MSH6-204ENST00000445503 SNRNP25Q9BV90 132 aaKnown RBP12.27□□□□□ -0.44
MSH6-204ENST00000445503 CDT1Q9H211 546 aa12.27□□□□□ -0.44
MSH6-204ENST00000445503 hCG_2014768A0A024R1R8 64 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 F7P08709 466 aaPredicted RBP12.27□□□□□ -0.45
MSH6-204ENST00000445503 ENO3P13929 434 aaPredicted RBP12.27□□□□□ -0.45
MSH6-204ENST00000445503 SERPINB5P36952 375 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 GRIA1P42261 906 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 TNFAIP2Q03169 654 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 ART3Q13508 389 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 DCAF6Q58WW2 860 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 CCNJLQ8IV13 435 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 ULK2Q8IYT8 1036 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 ANKRD27Q96NW4 1050 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 EBF4Q9BQW3 602 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 KCNK4Q9NYG8 393 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 AFG3L2Q9Y4W6 797 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 ACKR2O00590 384 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 DCXO43602 365 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 IL18RAPO95256 599 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 EDN1P05305 212 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 SLC1A6P48664 564 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 SERPINB9P50453 376 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 GTF2A2P52657 109 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 ZNF143P52747 638 aaPredicted RBP12.27□□□□□ -0.45
MSH6-204ENST00000445503 GBE1Q04446 702 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 NOMO1Q15155 1222 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 UNC5AQ6ZN44 842 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 RELL1Q8IUW5 271 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 KIAA0319LQ8IZA0 1049 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 ZNF408Q9H9D4 720 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 ZNF214Q9UL59 606 aaPredicted RBP12.27□□□□□ -0.45
MSH6-204ENST00000445503 C10orf71Q711Q0 1435 aa12.27□□□□□ -0.45
MSH6-204ENST00000445503 GOLGA8TH3BQL2 631 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 KCNK1O00180 336 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 ANPEPP15144 967 aa12.26□□□□□ -0.45
MSH6-204ENST00000445503 SP100P23497 879 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms