RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 SPIRE1Q08AE8 756 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 ZNF844Q08AG5 666 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 ZRANB3Q5FWF4 1079 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 RASIP1Q5U651 963 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 ZNF662Q6ZS27 426 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 FAM183BPQ6ZVS7 135 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 TMC7Q7Z402 723 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 KIF2BQ8N4N8 673 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 GOLGA2P5Q9HBQ8 144 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 NT5MQ9NPB1 228 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 RBPJLQ9UBG7 517 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 LRP6O75581 1613 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 UMODL1Q5DID0 1318 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 APOC4-APOC2K7ER74 178 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 APOC2P02655 101 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 TPH1P17752 444 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 ELAVL2Q12926 359 aaKnown RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 DAW1Q8N136 415 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 MRPS31Q92665 395 aaKnown RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 DCUN1D1Q96GG9 259 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 HES6Q96HZ4 224 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 LRRC40Q9H9A6 602 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 AAASQ9NRG9 546 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 AAR2Q9Y312 384 aaKnown RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 STX7O15400 261 aaKnown RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 MMP3P08254 477 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 HSPA8P11142 646 aaKnown RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 CHRM3P20309 590 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 ICAM3P32942 547 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 IFI35P80217 286 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 NBPF20Q3BBV1 942 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 THEMIS2Q5TEJ8 643 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 HTR3CQ8WXA8 447 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 KAT2BQ92831 832 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 C18orf25Q96B23 403 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 PPP1R2P1Q96PQ5 205 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 NIFKQ9BYG3 293 aaKnown RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 SHCBP1LQ9BZQ2 653 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 POPDC2Q9HBU9 364 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 L3MBTL1Q9Y468 752 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 NCANO14594 1321 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 LOC100653049A0A140TA62 436 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 KRT34O76011 436 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 LUC7L3O95232 432 aaKnown RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 ELNP15502 786 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 AVPR1AP37288 418 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 HIRAP54198 1017 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 EFTUD2Q15029 972 aaKnown RBP eCLIP12.69□□□□□ -0.382e-6■■■■■ 57.6
TCOF1-205ENST00000439160 RBBP7Q16576 425 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 SLC26A11Q86WA9 606 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 HELQQ8TDG4 1101 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 NAT9Q9BTE0 207 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 ELOVL4Q9GZR5 314 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 SALL4Q9UJQ4 1053 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 ARL2P36404 184 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 PGM1P36871 562 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 DEFB115Q30KQ5 88 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 PHF13Q86YI8 300 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 YAF2Q8IY57 180 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 B3GALNT2Q8NCR0 500 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 TTYH3Q9C0H2 523 aa12.69□□□□□ -0.38
TCOF1-205ENST00000439160 PHRF1Q9P1Y6 1649 aaKnown RBP12.69□□□□□ -0.38
TCOF1-205ENST00000439160 LOC102724159A0A0B4J2E5 919 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 A0A0G2JLL6 359 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 STK25O00506 426 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 TREHO43280 583 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 USP12O75317 370 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 RAG1P15918 1043 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 YBX3P16989 372 aaKnown RBP eCLIP12.68□□□□□ -0.389e-6■□□□□ 10.4
TCOF1-205ENST00000439160 GLRBP48167 497 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 TUBP50607 506 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 TAS2R40P59535 323 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 LBRQ14739 615 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 PWP2Q15269 919 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 SPRYD7Q5W111 196 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 PTRHD1Q6GMV3 140 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 TTC23LQ6PF05 361 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 NPNTQ6UXI9 565 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 PRRT2Q7Z6L0 340 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 FICDQ9BVA6 458 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 TKTL2Q9H0I9 626 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ATXN3LQ9H3M9 355 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ST6GALNAC4Q9H4F1 302 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CHST12Q9NRB3 414 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 IARS2Q9NSE4 1012 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 NINJ2Q9NZG7 142 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 BAZ2AQ9UIF9 1905 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 DUOX1Q9NRD9 1551 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CFAP73A6NFT4 308 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 BTNL10A8MVZ5 291 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CBX4O00257 560 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 NPR3P17342 541 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 GRM5P41594 1212 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CRYBB1P53674 252 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 POU6F1Q14863 301 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ACAP1Q15027 740 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 DRC3Q9H069 523 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 NSMCE4AQ9NXX6 385 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 GPR25O00155 361 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 RNF103O00237 685 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms