RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PPP3CAQ08209 521 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 INCA1Q0VD86 236 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 MAP7D1Q3KQU3 841 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 SDE2Q6IQ49 451 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 TOGARAM2Q6ZUX3 1019 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 DEFB124Q8NES8 71 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 HNRNPABQ99729 332 aaKnown RBP15.29■□□□□ 0.04
SDC1-204ENST00000429035 GTPBP2Q9BX10 602 aaKnown RBP15.29■□□□□ 0.04
SDC1-204ENST00000429035 DNAI2Q9GZS0 605 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 CYLDQ9NQC7 956 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 FSCN3Q9NQT6 498 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 PLK2Q9NYY3 685 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 TRAF3IP3Q9Y228 551 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 HPSEQ9Y251 543 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 RAD54BQ9Y620 910 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 HHLA1C9JL84 531 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 IKBKBO14920 756 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 AP5Z1O43299 807 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 CACNG3O60359 315 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 RHOBTB3O94955 611 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 RALAP11233 206 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 ENGP17813 658 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 ITPKAP23677 461 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 DGKGP49619 791 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 LMAN2Q12907 356 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 PPP1R26Q5T8A7 1209 aaPredicted RBP15.28■□□□□ 0.04
SDC1-204ENST00000429035 KIAA1324Q6UXG2 1013 aaKnown RBP15.28■□□□□ 0.04
SDC1-204ENST00000429035 HTR3DQ70Z44 454 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 TADA2BQ86TJ2 420 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 SYT12Q8IV01 421 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 ACOX2Q99424 681 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 CYP3A43Q9HB55 503 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 TMEM74BQ9NUR3 256 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 CACNA2D2Q9NY47 1150 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 WDR35Q9P2L0 1181 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 EVLQ9UI08 416 aaPredicted RBP15.28■□□□□ 0.04
SDC1-204ENST00000429035 DNMT3LQ9UJW3 386 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 CYP8B1Q9UNU6 501 aa15.28■□□□□ 0.04
SDC1-204ENST00000429035 A0A0A0MRY4 1105 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 CDX4O14627 284 aaPredicted RBP15.27■□□□□ 0.04
SDC1-204ENST00000429035 CILPO75339 1184 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 NDUFV2P19404 249 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 SPINK2P20155 84 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 RPL13P26373 211 aaKnown RBP15.27■□□□□ 0.04
SDC1-204ENST00000429035 PSMC2P35998 433 aaKnown RBP15.27■□□□□ 0.04
SDC1-204ENST00000429035 MXI1P50539 228 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 KIAA1211LQ6NV74 962 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 SLC36A4Q6YBV0 504 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 IPO4Q8TEX9 1081 aaKnown RBP15.27■□□□□ 0.04
SDC1-204ENST00000429035 EEF2KMTQ96G04 330 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 HEXIM2Q96MH2 286 aaKnown RBP15.27■□□□□ 0.04
SDC1-204ENST00000429035 SLC6A17Q9H1V8 727 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 TMEM8AQ9HCN3 771 aa15.27■□□□□ 0.04
SDC1-204ENST00000429035 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.27■□□□□ 0.04
SDC1-204ENST00000429035 KMT2BQ9UMN6 2715 aaPredicted RBP15.27■□□□□ 0.03
SDC1-204ENST00000429035 PRRT4C9JH25 899 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 MAPK13O15264 365 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 GREM1O60565 184 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 EPB41P11171 864 aaKnown RBP15.26■□□□□ 0.03
SDC1-204ENST00000429035 DPP6P42658 865 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 PLA2G4AP47712 749 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 SHC2P98077 582 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 EFEMP1Q12805 493 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 DPYDQ12882 1025 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 ADAM9Q13443 819 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 DCAF17Q5H9S7 520 aaPredicted RBP15.26■□□□□ 0.03
SDC1-204ENST00000429035 TCERG1LQ5VWI1 586 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 KRBA2Q6ZNG9 492 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 RSRC2Q7L4I2 434 aaKnown RBP15.26■□□□□ 0.03
SDC1-204ENST00000429035 SMYD4Q8IYR2 804 aaPredicted RBP15.26■□□□□ 0.03
SDC1-204ENST00000429035 KCNV2Q8TDN2 545 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 TMEM174Q8WUU8 243 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 DUSP9Q99956 384 aaKnown RBP15.26■□□□□ 0.03
SDC1-204ENST00000429035 GOLPH3LQ9H4A5 285 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 PNPLA8Q9NP80 782 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 CD93Q9NPY3 652 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 MARK1Q9P0L2 795 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 HCN2Q9UL51 889 aa15.26■□□□□ 0.03
SDC1-204ENST00000429035 IGHV1OR15-9A0A0B4J2B8 117 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 A0A1W2PQF6 199 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 NDUFS2O75306 463 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 STC2O76061 302 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 CORO1AP31146 461 aaKnown RBP15.25■□□□□ 0.03
SDC1-204ENST00000429035 KIF11P52732 1056 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 ZNF33AQ06730 810 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 NFIL3Q16649 462 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 KRT39Q6A163 491 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 CCDC186Q7Z3E2 898 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 SCD5Q86SK9 330 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 CACUL1Q86Y37 369 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 RGL4Q8IZJ4 473 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 GUF1Q8N442 669 aaKnown RBP15.25■□□□□ 0.03
SDC1-204ENST00000429035 HDDC3Q8N4P3 179 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 HSPA12BQ96MM6 686 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 DUSP16Q9BY84 665 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 SLC32A1Q9H598 525 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 GDPD2Q9HCC8 539 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 PILRBQ9UKJ0 227 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 PCDH15Q96QU1 1955 aa15.25■□□□□ 0.03
SDC1-204ENST00000429035 USP24Q9UPU5 2620 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms