RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 OLIG1Q8TAK6 271 aa17.98■□□□□ 0.47
TRIM39-209ENST00000428728 ERCC4Q92889 916 aaPredicted RBP17.98■□□□□ 0.47
TRIM39-209ENST00000428728 ERLEC1Q96DZ1 483 aa17.98■□□□□ 0.47
TRIM39-209ENST00000428728 CISHQ9NSE2 258 aa17.98■□□□□ 0.47
TRIM39-209ENST00000428728 RMND1Q9NWS8 449 aa17.98■□□□□ 0.47
TRIM39-209ENST00000428728 RAB20Q9NX57 234 aa17.98■□□□□ 0.47
TRIM39-209ENST00000428728 DNMT3LQ9UJW3 386 aa17.98■□□□□ 0.47
TRIM39-209ENST00000428728 LNP1A1A4G5 178 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 GOLGA6L4A6NEF3 574 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 PATE3B3GLJ2 98 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 CACNG3O60359 315 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 STX10O60499 249 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 P2RY2P41231 377 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 NUDT18Q6ZVK8 323 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 TRMT11Q7Z4G4 463 aaKnown RBP17.97■□□□□ 0.47
TRIM39-209ENST00000428728 SCD5Q86SK9 330 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 FRMD1Q8N878 549 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 SLC4A11Q8NBS3 891 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 TATDN2Q93075 761 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 XPO6Q96QU8 1125 aaKnown RBP17.97■□□□□ 0.47
TRIM39-209ENST00000428728 TSG101Q99816 390 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 RASAL2Q9UJF2 1139 aa17.97■□□□□ 0.47
TRIM39-209ENST00000428728 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 TRIM49BA6NDI0 452 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 MAP3K13O43283 966 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 STC2O76061 302 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 HMBSP08397 361 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 RALAP11233 206 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 HOXB2P14652 356 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 PLA2G4AP47712 749 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 PSEN1P49768 467 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 RAD23BP54727 409 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 CBWD6Q4V339 395 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 CBWD3Q5JTY5 395 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 CBWD5Q5RIA9 395 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 ZNF658Q5TYW1 1059 aaPredicted RBP17.96■□□□□ 0.47
TRIM39-209ENST00000428728 KLHDC10Q6PID8 442 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 TOGARAM2Q6ZUX3 1019 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 TMEFF1Q8IYR6 380 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 PIGKQ92643 395 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 TMEM176AQ96HP8 235 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 PLK2Q9NYY3 685 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 WDR35Q9P2L0 1181 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 HCN2Q9UL51 889 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 GON4LQ3T8J9 2241 aa17.96■□□□□ 0.47
TRIM39-209ENST00000428728 ATXN2Q99700 1313 aaKnown RBP17.96■□□□□ 0.46
TRIM39-209ENST00000428728 TM4SF5O14894 197 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 KHNYNO15037 678 aaKnown RBP17.95■□□□□ 0.46
TRIM39-209ENST00000428728 NTSR1P30989 418 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 PMS1P54277 932 aaKnown RBP17.95■□□□□ 0.46
TRIM39-209ENST00000428728 EFEMP1Q12805 493 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 GOLGA7BQ2TAP0 167 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 Q6ZNB5 142 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 LPCAT2Q7L5N7 544 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 TADA2BQ86TJ2 420 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 TTC39CQ8N584 583 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 ACOX2Q99424 681 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 MARK1Q9P0L2 795 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 MBD1Q9UIS9 605 aaPredicted RBP17.95■□□□□ 0.46
TRIM39-209ENST00000428728 USP3Q9Y6I4 520 aa17.95■□□□□ 0.46
TRIM39-209ENST00000428728 C4orf47A7E2U8 309 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 SLC16A3O15427 465 aaKnown RBP17.94■□□□□ 0.46
TRIM39-209ENST00000428728 SMC2O95347 1197 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 GABRG2P18507 467 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 DGKGP49619 791 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 MAP7D1Q3KQU3 841 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 ANKRD40Q6AI12 368 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 RSRC2Q7L4I2 434 aaKnown RBP17.94■□□□□ 0.46
TRIM39-209ENST00000428728 PIGZQ86VD9 579 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 CHPFQ8IZ52 775 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 SMARCE1Q969G3 411 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 GSDMAQ96QA5 445 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 CDK5RAP1Q96SZ6 601 aaKnown RBP17.94■□□□□ 0.46
TRIM39-209ENST00000428728 CLIC5Q9NZA1 410 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 CALCOCO1Q9P1Z2 691 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 CKAP5Q14008 2032 aa17.94■□□□□ 0.46
TRIM39-209ENST00000428728 ASCC3Q8N3C0 2202 aaKnown RBP17.94■□□□□ 0.46
TRIM39-209ENST00000428728 TPRP12270 2363 aaKnown RBP17.94■□□□□ 0.46
TRIM39-209ENST00000428728 PRRT4C9JH25 899 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 CORO1AP31146 461 aaKnown RBP17.93■□□□□ 0.46
TRIM39-209ENST00000428728 PTGER3P43115 390 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 SLC8A3P57103 927 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 MCCD1P59942 119 aaPredicted RBP17.93■□□□□ 0.46
TRIM39-209ENST00000428728 FKBP3Q00688 224 aaKnown RBP17.93■□□□□ 0.46
TRIM39-209ENST00000428728 BYSLQ13895 437 aaKnown RBP17.93■□□□□ 0.46
TRIM39-209ENST00000428728 N4BP2L1Q5TBK1 243 aaPredicted RBP17.93■□□□□ 0.46
TRIM39-209ENST00000428728 ARHGAP17Q68EM7 881 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 ZC3H3Q8IXZ2 948 aaKnown RBP17.93■□□□□ 0.46
TRIM39-209ENST00000428728 KCNV2Q8TDN2 545 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 FAXDC2Q96IV6 333 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 LSM14BQ9BX40 385 aaKnown RBP17.93■□□□□ 0.46
TRIM39-209ENST00000428728 TMEM9BQ9NQ34 198 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 CACNA2D2Q9NY47 1150 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 STARD13Q9Y3M8 1113 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 RAD54BQ9Y620 910 aa17.93■□□□□ 0.46
TRIM39-209ENST00000428728 LAMA1P25391 3075 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 A0A1W2PQF6 199 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 TULP2O00295 520 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 KLKB1P03952 638 aa17.92■□□□□ 0.46
TRIM39-209ENST00000428728 CD19P15391 556 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms