RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 APOC2P02655 101 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 CSH1P0DML2 217 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 CSH2P0DML3 217 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 RBP3P10745 1247 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 ACAT1P24752 427 aaKnown RBP11.08□□□□□ -0.64
USP54-204ENST00000422491 VARSP26640 1264 aaKnown RBP11.08□□□□□ -0.64
USP54-204ENST00000422491 NR1H2P55055 460 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 TAP1Q03518 808 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 ATG14Q6ZNE5 492 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 TRIM67Q6ZTA4 783 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 THNSL1Q8IYQ7 743 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 GFM2Q969S9 779 aaKnown RBP11.08□□□□□ -0.64
USP54-204ENST00000422491 HSPBAP1Q96EW2 488 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 CNBD2Q96M20 576 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 PHF12Q96QT6 1004 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 DHX33Q9H6R0 707 aaKnown RBP11.08□□□□□ -0.64
USP54-204ENST00000422491 ARHGAP28Q9P2N2 729 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 ZNF232Q9UNY5 417 aa11.08□□□□□ -0.64
USP54-204ENST00000422491 TRDMT1O14717 391 aaKnown RBP11.07□□□□□ -0.64
USP54-204ENST00000422491 CHADO15335 359 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 LRCH4O75427 683 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 TOM1L1O75674 476 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 BBOX1O75936 387 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 GH2P01242 217 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 FGF3P11487 239 aaPredicted RBP11.07□□□□□ -0.64
USP54-204ENST00000422491 CPA3P15088 417 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 TNNI1P19237 187 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 IDH3AP50213 366 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 HDAC4P56524 1084 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 PPIDQ08752 370 aaKnown RBP11.07□□□□□ -0.64
USP54-204ENST00000422491 LPIN1Q14693 890 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 FASTKD1Q53R41 847 aaKnown RBP11.07□□□□□ -0.64
USP54-204ENST00000422491 XKR9Q5GH70 373 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 IYDQ6PHW0 289 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 PTF1AQ7RTS3 328 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 TMEM126BQ8IUX1 230 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 SAMD3Q8N6K7 520 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 RIN3Q8TB24 985 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 ZNF526Q8TF50 670 aaPredicted RBP11.07□□□□□ -0.64
USP54-204ENST00000422491 AGO4Q9HCK5 861 aaKnown RBP11.07□□□□□ -0.64
USP54-204ENST00000422491 TBCCD1Q9NVR7 557 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 SLC9A2Q9UBY0 812 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 RIMS3Q9UJD0 308 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 PADI4Q9UM07 663 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 MRPL11Q9Y3B7 192 aaKnown RBP11.07□□□□□ -0.64
USP54-204ENST00000422491 NUB1Q9Y5A7 615 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 PCDHAC2Q9Y5I4 1007 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 AK5Q9Y6K8 562 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 E9PBE3 544 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 ZNF195O14628 629 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 MCF2LO15068 1137 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 KRT38O76015 456 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 MYL4P12829 197 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 YY1P25490 414 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 CD97P48960 835 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 PDPK2PQ6A1A2 396 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 KIAA0319LQ8IZA0 1049 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 BBS5Q8N3I7 341 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 IL31RAQ8NI17 732 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 PRPF31Q8WWY3 499 aaKnown RBP11.07□□□□□ -0.64
USP54-204ENST00000422491 KCNK16Q96T55 309 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 FAIMQ9NVQ4 179 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 DNAJC28Q9NX36 388 aa11.07□□□□□ -0.64
USP54-204ENST00000422491 ZC3H7BQ9UGR2 993 aaKnown RBP11.07□□□□□ -0.64
USP54-204ENST00000422491 LOC100653049A0A140TA62 436 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 EXTL3O43909 919 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 KRT34O76011 436 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 LSM8O95777 96 aaKnown RBP11.06□□□□□ -0.64
USP54-204ENST00000422491 KRT7P08729 469 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 FAM58BPP0C7Q3 252 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ALOX15P16050 662 aaPredicted RBP11.06□□□□□ -0.64
USP54-204ENST00000422491 TBXAS1P24557 533 aaPredicted RBP11.06□□□□□ -0.64
USP54-204ENST00000422491 CRKP46108 304 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 SLC1A6P48664 564 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 SOX10P56693 466 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 MTA1Q13330 715 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ADGRE1Q14246 886 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ADRM1Q16186 407 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 RARS2Q5T160 578 aaKnown RBP11.06□□□□□ -0.64
USP54-204ENST00000422491 LRRC8BQ6P9F7 803 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 POTEAQ6S8J7 498 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 TAS1R3Q7RTX0 852 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 RSPH3Q86UC2 560 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 PHTF2Q8N3S3 785 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 WDTC1Q8N5D0 677 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 UBR7Q8N806 425 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 SPATA18Q8TC71 538 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 SORT1Q99523 831 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 SLC2A11Q9BYW1 496 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 PCDH18Q9HCL0 1135 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 TMOD2Q9NZR1 351 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 THEGQ9P2T0 379 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 EMCNQ9ULC0 261 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ZMPSTE24O75844 475 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 APOEP02649 317 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 CAPNS1P04632 268 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 PSMA2P25787 234 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 ALDH1B1P30837 517 aa11.06□□□□□ -0.64
USP54-204ENST00000422491 RFC1P35251 1148 aaPredicted RBP11.06□□□□□ -0.64
USP54-204ENST00000422491 GABRB2P47870 512 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms