RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CRYBG2Q8N1P7 616 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 HDDC3Q8N4P3 179 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 SPRYD3Q8NCJ5 442 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 KIAA0895Q8NCT3 520 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 MRGPRX1Q96LB2 322 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 GABRG3Q99928 467 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 CUEDC2Q9H467 287 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 IL21RQ9HBE5 538 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 APOBEC3GQ9HC16 384 aaKnown RBP8.55□□□□□ -1.04
VIM-202ENST00000421459 CSNK1G1Q9HCP0 422 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 TLR8Q9NR97 1041 aaKnown RBP8.55□□□□□ -1.04
VIM-202ENST00000421459 DMAC2Q9NW81 257 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 CLEC4EQ9ULY5 219 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 PCDHA7Q9UN72 937 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 MSRB2Q9Y3D2 182 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 STARD13Q9Y3M8 1113 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 NEUROG3Q9Y4Z2 214 aa8.55□□□□□ -1.04
VIM-202ENST00000421459 UBE4BO95155 1302 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 PTPRDP23468 1912 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 SPAG17Q6Q759 2223 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 UPK3BL1B0FP48 263 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 UPK3BL2E5RIL1 263 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 NDUFS2O75306 463 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 KIF20AO95235 890 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 HLA-DRAP01903 254 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 CAPNS1P04632 268 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 CD58P19256 250 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 IL12RB1P42701 662 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 DGKGP49619 791 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 PKP1Q13835 747 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 GEN1Q17RS7 908 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 SGSM1Q2NKQ1 1148 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 PLEKHG6Q3KR16 790 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 FUT11Q495W5 492 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 KMT5BQ4FZB7 885 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 ZNF394Q53GI3 561 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 C10orf120Q5SQS8 335 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 SDE2Q6IQ49 451 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 LRSAM1Q6UWE0 723 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 Q6ZNB5 142 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 SV2AQ7L0J3 742 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 SLCO6A1Q86UG4 719 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 CACUL1Q86Y37 369 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 PIAS4Q8N2W9 510 aaPredicted RBP8.54□□□□□ -1.04
VIM-202ENST00000421459 CEP76Q8TAP6 659 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 KCNV2Q8TDN2 545 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 SORCS1Q8WY21 1168 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 CYFIP2Q96F07 1278 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 TOE1Q96GM8 510 aaKnown RBP8.54□□□□□ -1.04
VIM-202ENST00000421459 ZNF419Q96HQ0 510 aaPredicted RBP8.54□□□□□ -1.04
VIM-202ENST00000421459 INTS4Q96HW7 963 aaKnown RBP8.54□□□□□ -1.04
VIM-202ENST00000421459 ZNF396Q96N95 335 aaPredicted RBP8.54□□□□□ -1.04
VIM-202ENST00000421459 XPO6Q96QU8 1125 aaKnown RBP8.54□□□□□ -1.04
VIM-202ENST00000421459 MKRN2Q9H000 416 aaKnown RBP8.54□□□□□ -1.04
VIM-202ENST00000421459 KCTD10Q9H3F6 313 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 CYLDQ9NQC7 956 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.54□□□□□ -1.04
VIM-202ENST00000421459 COMMD8Q9NX08 183 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 LHX6Q9UPM6 363 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 SCML2Q9UQR0 700 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 SLCO1B1Q9Y6L6 691 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 STON1Q9Y6Q2 735 aa8.54□□□□□ -1.04
VIM-202ENST00000421459 SMG1Q96Q15 3661 aaKnown RBP8.54□□□□□ -1.04
VIM-202ENST00000421459 ITPR1Q14643 2758 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 NUP205Q92621 2012 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 TNRC6BQ9UPQ9 1833 aaKnown RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 PVALEFA0A1B0GWK0 134 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 TMEM8BA6NDV4 472 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 K7ELQ4 463 aaPredicted RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 ACTN4O43707 911 aaKnown RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 ZNF217O75362 1048 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 GJB3O75712 270 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 STC2O76061 302 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 YEATS4O95619 227 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 ASS1P00966 412 aaKnown RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 NR3C1P04150 777 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 FAM200BP0CF97 657 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 TRIM49P0CI25 452 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 TRIM49CP0CI26 452 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 PIK3CAP42336 1068 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 ME1P48163 572 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 GCLMP48507 274 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 SNRPFP62306 86 aaKnown RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 BNC1Q01954 994 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 SCAPQ12770 1279 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 EFEMP1Q12805 493 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 GRIK2Q13002 908 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 TRIP6Q15654 476 aaKnown RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 ZACNQ401N2 412 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 PREPLQ4J6C6 727 aaPredicted RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 PPP1R26Q5T8A7 1209 aaPredicted RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 FYB2Q5VWT5 728 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 RESP18Q5W5W9 173 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 CEP135Q66GS9 1140 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 NUDT18Q6ZVK8 323 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 RAB44Q7Z6P3 723 aaPredicted RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 TAS1R2Q8TE23 839 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 NDRG1Q92597 394 aaKnown RBP8.53□□□□□ -1.04
VIM-202ENST00000421459 PAGE5Q96GU1 130 aa8.53□□□□□ -1.04
VIM-202ENST00000421459 HNRNPABQ99729 332 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms