RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 RSAD1Q9HA92 442 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 PICK1Q9NRD5 415 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 RNF19AQ9NV58 838 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 ASB3Q9Y575 518 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 FAM159BA6NKW6 160 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 FZD9O00144 591 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 MCF2LO15068 1137 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 LYPLA1O75608 230 aaPredicted RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 VAV1P15498 845 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 GPD1P21695 349 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 INCA1Q0VD86 236 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 UBAP2LQ14157 1087 aaKnown RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 HADHQ16836 314 aaKnown RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 PPP1R26Q5T8A7 1209 aaPredicted RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 SCG3Q8WXD2 468 aaKnown RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 ADPGKQ9BRR6 497 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 SNRNP25Q9BV90 132 aaKnown RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 VRTNQ9H8Y1 702 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 AS3MTQ9HBK9 375 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 MARCOQ9UEW3 520 aaPredicted RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 TSPAN16Q9UKR8 245 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 RPL26L1Q9UNX3 145 aaKnown RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 TNFSF13BQ9Y275 285 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 RALGAPA2Q2PPJ7 1873 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 C22orf31O95567 290 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 POLR2BP30876 1174 aaKnown RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 RAP1GDS1P52306 607 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 ZNF667Q5HYK9 610 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 CELF3Q5SZQ8 465 aaKnown RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 FYB2Q5VWT5 728 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 RIOX2Q8IUF8 465 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 CHST13Q8NET6 341 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 DNAJC9Q8WXX5 260 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 SLC13A1Q9BZW2 595 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 PIH1D1Q9NWS0 290 aaKnown RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 STK32BQ9NY57 414 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 IL1RAPL1Q9NZN1 696 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 KCNG1Q9UIX4 513 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 MTO1Q9Y2Z2 717 aaKnown RBP10.24□□□□□ -0.77
SS18-203ENST00000415083 HEY1Q9Y5J3 304 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 GJA3Q9Y6H8 435 aa10.24□□□□□ -0.77
SS18-203ENST00000415083 F5H423 210 aaPredicted RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 ZNF195O14628 629 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 CAPN9O14815 690 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 PAPSS1O43252 624 aaPredicted RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 TROVE2P10155 538 aaKnown RBP eCLIP10.23□□□□□ -0.77
SS18-203ENST00000415083 KITP10721 976 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 PDGFRAP16234 1089 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 HMGB2P26583 209 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 CRADDP78560 199 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 NOL9Q5SY16 702 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 TTC39BQ5VTQ0 682 aaPredicted RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 C16orf46Q6P387 395 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 MAMDC4Q6UXC1 1216 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 C7orf26Q96N11 449 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 MRPL45Q9BRJ2 306 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 CNPY3Q9BT09 278 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 TMPRSS4Q9NRS4 437 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 HOXC10Q9NYD6 342 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 ZNF180Q9UJW8 692 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 PSAT1Q9Y617 370 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 USP3Q9Y6I4 520 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 IQANK1A0A1B0GTG1 560 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 BCLAF3A2AJT9 711 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 PRR5-ARHGAP8B1AHC4 643 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 INO80B-WBP1J3KQ70 363 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 ALDOAP04075 364 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 SP100P23497 879 aaPredicted RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 STIP1P31948 543 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 ARHGAP8P85298 464 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 OLIG2Q13516 323 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 VGLL4Q14135 290 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 RABGAP1LQ5R372 815 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 EFCAB12Q6NXP0 572 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 LCLAT1Q6UWP7 414 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 DPH6Q7L8W6 267 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 FBXO16Q8IX29 292 aaPredicted RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 SCUBE3Q8IX30 993 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 TP53INP2Q8IXH6 220 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 PYROXD2Q8N2H3 581 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 GATA6Q92908 595 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 ANKRD36BP1Q96IX9 119 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 GORASP1Q9BQQ3 440 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 INO80BQ9C086 356 aaPredicted RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 MKS1Q9NXB0 559 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 MOCS1Q9NZB8 636 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 HESX1Q9UBX0 185 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 H7C0C1 242 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 GYG2O15488 501 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 BUD23O43709 281 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 TNNC2P02585 160 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 AMHP03971 560 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 ENO1P06733 434 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 L1CAMP32004 1257 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 ATP5OP48047 213 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 THOC5Q13769 683 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 MXD4Q14582 209 aaPredicted RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 CHI3L2Q15782 390 aa10.23□□□□□ -0.77
SS18-203ENST00000415083 SMAD1Q15797 465 aaKnown RBP10.23□□□□□ -0.77
SS18-203ENST00000415083 RNF220Q5VTB9 566 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms