RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 SMPD4Q9NXE4 827 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 MTRRQ9UBK8 725 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 NUP205Q92621 2012 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 C2orf78A6NCI8 922 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 KRIT1O00522 736 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 CCL16O15467 120 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 ETS1P14921 441 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 LAG3P18627 525 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 CDH6P55285 790 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 FAM193AP78312 1265 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 EFEMP1Q12805 493 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 IFI16Q16666 785 aaKnown RBP12.2□□□□□ -0.46
SKA3-203ENST00000400018 C4orf50Q6ZRC1 276 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 DCP1BQ8IZD4 617 aaKnown RBP12.2□□□□□ -0.46
SKA3-203ENST00000400018 SYCE1Q8N0S2 351 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 TTC39CQ8N584 583 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 GLIS1Q8NBF1 620 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.2□□□□□ -0.46
SKA3-203ENST00000400018 MRPL17Q9NRX2 175 aaKnown RBP12.2□□□□□ -0.46
SKA3-203ENST00000400018 GKN1Q9NS71 199 aa12.2□□□□□ -0.46
SKA3-203ENST00000400018 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.2□□□□□ -0.46
SKA3-203ENST00000400018 IRF1P10914 325 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 EPCAMP16422 314 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 DSG1Q02413 1049 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 STILQ15468 1287 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 RAB41Q5JT25 222 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 C1orf228Q6PIY5 440 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 DENND5BQ6ZUT9 1274 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 GPATCH11Q8N954 259 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 SPPL3Q8TCT6 385 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 FBXO32Q969P5 355 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 IGFLR1Q9H665 355 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 ZNF446Q9NWS9 450 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 FAM53CQ9NYF3 392 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.19□□□□□ -0.46
SKA3-203ENST00000400018 CTAGE15A4D2H0 777 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 TRUB2O95900 331 aaKnown RBP12.19□□□□□ -0.46
SKA3-203ENST00000400018 CTAGE8P0CG41 777 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 SRGAP2BP0DMP2 458 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 MYBL2P10244 700 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 KLRC2P26717 231 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 BMPR1AP36894 532 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 IRAK1P51617 712 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 RWDD2BP57060 319 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 YWHAGP61981 247 aaKnown RBP eCLIP12.19□□□□□ -0.46
SKA3-203ENST00000400018 RSRC2Q7L4I2 434 aaKnown RBP12.19□□□□□ -0.46
SKA3-203ENST00000400018 SLC26A9Q7LBE3 791 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 CTAGE6Q86UF2 777 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 CTAGE4Q8IX94 777 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 TXLNBQ8N3L3 684 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 KCTD6Q8NC69 237 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 PIK3R5Q8WYR1 880 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 MYEOVQ96EZ4 313 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 HSFY1Q96LI6 401 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 ZNF334Q9HCZ1 680 aaPredicted RBP12.19□□□□□ -0.46
SKA3-203ENST00000400018 MYO16Q9Y6X6 1858 aa12.19□□□□□ -0.46
SKA3-203ENST00000400018 RNF8O76064 485 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 ZSCAN5DPP0CG00 497 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 PECAM1P16284 738 aaPredicted RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 GOT1P17174 413 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 CYP4F8P98187 520 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 TAP1Q03518 808 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 CFAP221Q4G0U5 840 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 ICE2Q659A1 982 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 SLC8B1Q6J4K2 584 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 FBXO38Q6PIJ6 1188 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 DDX53Q86TM3 631 aaKnown RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 RHOT1Q8IXI2 618 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 NUP93Q8N1F7 819 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 RNF34Q969K3 372 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 MYCBPQ99417 103 aaPredicted RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 CEP41Q9BYV8 373 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 ZBP1Q9H171 429 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 FAM204AQ9H8W3 233 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 POPDC2Q9HBU9 364 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 LCMT1Q9UIC8 334 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 WDFY4Q6ZS81 3184 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 TTI1O43156 1089 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 SEC31AO94979 1220 aaKnown RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 HAPLN1P10915 354 aaPredicted RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 TCP1P17987 556 aaKnown RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 MATKP42679 507 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 KCNQ1P51787 676 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 HADHBP55084 474 aaKnown RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 KRT17Q04695 432 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 DEUP1Q05D60 604 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 CHRDL2Q6WN34 429 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 CIR1Q86X95 450 aaPredicted RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 UBL4BQ8N7F7 174 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 MSANTD4Q8NCY6 345 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 ZNF461Q8TAF7 563 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 DQX1Q8TE96 717 aaKnown RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 DEPDC1BQ8WUY9 529 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 ZNF512Q96ME7 567 aaPredicted RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 SLITRK1Q96PX8 696 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 CNPY3Q9BT09 278 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 ANKZF1Q9H8Y5 726 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 TRPC7Q9HCX4 862 aa12.18□□□□□ -0.46
SKA3-203ENST00000400018 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.18□□□□□ -0.46
SKA3-203ENST00000400018 YIPF1Q9Y548 306 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms