RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NOTUMQ6P988 496 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 PLEKHH3Q7Z736 793 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 SLC2A14Q8TDB8 520 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 USP6NLQ92738 828 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 CFAP36Q96G28 342 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 POPDC2Q9HBU9 364 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 MEIS3P2A8K0S8 358 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 IGF2BP3O00425 579 aaKnown RBP eCLIP13.9□□□□□ -0.18
CCDC3-202ENST00000378839 CLDN5O00501 218 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 MDM4O15151 490 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 CHADO15335 359 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 KRT16P08779 473 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 MSH2P43246 934 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 SNX17Q15036 470 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 KIAA0319Q5VV43 1072 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 CDHR3Q6ZTQ4 885 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 LIMS2Q7Z4I7 341 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.9□□□□□ -0.18
CCDC3-202ENST00000378839 SLC44A1Q8WWI5 657 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 TBCBQ99426 244 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 CLEC11AQ9Y240 323 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 USP3Q9Y6I4 520 aa13.9□□□□□ -0.18
CCDC3-202ENST00000378839 BCLAF3A2AJT9 711 aaKnown RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 F5H423 210 aaPredicted RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 PHBP35232 272 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 BEX3Q00994 111 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 ANKRD52Q8NB46 1076 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 SMG8Q8ND04 991 aaKnown RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 BEST2Q8NFU1 509 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 C10orf82Q8WW14 230 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 DHX35Q9H5Z1 703 aaKnown RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 FAM124BQ9H5Z6 455 aaPredicted RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 SENP1Q9P0U3 644 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 CPA4Q9UI42 421 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 PIN4Q9Y237 131 aaKnown RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 ZNF638Q14966 1978 aaKnown RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 KPNA7A9QM74 516 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 AMHP03971 560 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 NQO1P15559 274 aaKnown RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 TGM2P21980 687 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 GNL1P36915 607 aaPredicted RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 AFF1P51825 1210 aaKnown RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 YWHAGP61981 247 aaKnown RBP eCLIP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 STILQ15468 1287 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 FBXO47Q5MNV8 452 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 CRYBG2Q8N1P7 616 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 GIMAP7Q8NHV1 300 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 ZNF670Q9BS34 389 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 NRCAMQ92823 1304 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 ATP6V1G2O95670 118 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 APRTP07741 180 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 ZNF865P0CJ78 1059 aaPredicted RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 VAV1P15498 845 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 NDUFV1P49821 464 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 OVGP1Q12889 678 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 PTK7Q13308 1070 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 E2F5Q15329 346 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 DPYSL2Q16555 572 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 KLHL38Q2WGJ6 581 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 CES4AQ5XG92 561 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 PAQR9Q6ZVX9 377 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 SLC26A9Q7LBE3 791 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 UNC93AQ86WB7 457 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 TP53INP2Q8IXH6 220 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 STK32AQ8WU08 396 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 UTP4Q969X6 686 aaKnown RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 CSPG4P5Q96PW8 444 aa13.89□□□□□ -0.19
CCDC3-202ENST00000378839 SSU72Q9NP77 194 aaKnown RBP13.89□□□□□ -0.19
CCDC3-202ENST00000378839 SMIM35A0A1B0GVV1 85 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 RRN3P2A6NIE6 340 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 SKAP2O75563 359 aaPredicted RBP13.88□□□□□ -0.19
CCDC3-202ENST00000378839 GOT1P17174 413 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 AMPD1P23109 780 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 ACAT1P24752 427 aaKnown RBP13.88□□□□□ -0.19
CCDC3-202ENST00000378839 ETV4P43268 484 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 PTPN9P43378 593 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 NEK3P51956 506 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 MFSD10Q14728 455 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 XKR4Q5GH76 650 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 NCBP2-AS2Q69YL0 99 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 TRMT10BQ6PF06 316 aaKnown RBP13.88□□□□□ -0.19
CCDC3-202ENST00000378839 TTC39CQ8N584 583 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 RNF169Q8NCN4 708 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 PAK5Q9P286 719 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 KLHL14Q9P2G3 628 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 HMX2A2RU54 273 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 NDC80O14777 642 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 ZBED1O96006 694 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 SETSIPP0DME0 302 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 T-ENOLP0DO92 83 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 PYGBP11216 843 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 MAGEA3P43357 314 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 MAGEA6P43360 314 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 BST2Q10589 180 aaKnown RBP13.88□□□□□ -0.19
CCDC3-202ENST00000378839 CBLBQ13191 982 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 HHATQ5VTY9 493 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 MAP7D3Q8IWC1 876 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 RFWD2Q8NHY2 731 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 CYTH2Q99418 400 aa13.88□□□□□ -0.19
CCDC3-202ENST00000378839 PPCSQ9HAB8 311 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms