RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 PCDHB12Q9Y5F1 795 aa16.21■□□□□ 0.18
CCDC40-202ENST00000374876 CITO14578 2027 aa16.21■□□□□ 0.18
CCDC40-202ENST00000374876 GOLGA6L7A0A1B0GV03 622 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 TMEM120BA0PK00 339 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 C3orf70A6NLC5 250 aaPredicted RBP16.2■□□□□ 0.18
CCDC40-202ENST00000374876 F8W810 466 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 M0QYV0 167 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 NDC80O14777 642 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 CDH16O75309 829 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 FSBPO95073 299 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 ALDH2P05091 517 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 VIMP08670 466 aaKnown RBP16.2■□□□□ 0.18
CCDC40-202ENST00000374876 ETS1P14921 441 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 LAG3P18627 525 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 OR1G1P47890 313 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 DYNLT1P63172 113 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 DSC1Q08554 894 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 GRIK3Q13003 919 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 GPM6BQ13491 265 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 MORF4L2Q15014 288 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 KCNT1Q5JUK3 1230 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 PACS2Q86VP3 889 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 TMEM173Q86WV6 379 aaPredicted RBP16.2■□□□□ 0.18
CCDC40-202ENST00000374876 EMC1Q8N766 993 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 CCDC197Q8NCU1 140 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 CXorf38Q8TB03 319 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 C18orf25Q96B23 403 aaPredicted RBP16.2■□□□□ 0.18
CCDC40-202ENST00000374876 HEXIM2Q96MH2 286 aaKnown RBP16.2■□□□□ 0.18
CCDC40-202ENST00000374876 CFAP57Q96MR6 1250 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 ZNF558Q96NG5 402 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 PPP1R10Q96QC0 940 aaKnown RBP16.2■□□□□ 0.18
CCDC40-202ENST00000374876 TMEM121Q9BTD3 319 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 NSRP1Q9H0G5 558 aaKnown RBP16.2■□□□□ 0.18
CCDC40-202ENST00000374876 VRTNQ9H8Y1 702 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 KCNK9Q9NPC2 374 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 CNTN3Q9P232 1028 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.2■□□□□ 0.18
CCDC40-202ENST00000374876 AGAP1Q9UPQ3 857 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 EFR3BQ9Y2G0 817 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 RWDD3Q9Y3V2 267 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 CAPN7Q9Y6W3 813 aa16.2■□□□□ 0.18
CCDC40-202ENST00000374876 CASTOR2A6NHX0 329 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 H0YHG0 523 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 NRP1O14786 923 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 IFNB1P01574 187 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 ITGB1P05556 798 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 ABHD2P08910 425 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 GSCP56915 257 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-202ENST00000374876 SOX4Q06945 474 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-202ENST00000374876 DPH6Q7L8W6 267 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 LRRC34Q8IZ02 419 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 ARFGAP1Q8N6T3 406 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 ANKS4BQ8N8V4 417 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 MGARPQ8TDB4 240 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 RSPH1Q8WYR4 309 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 TTC25Q96NG3 672 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 SAMD11Q96NU1 681 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 PCDH9Q9HC56 1237 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 MTMR10Q9NXD2 777 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 SAMD15Q9P1V8 674 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 TBK1Q9UHD2 729 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 LGALS13Q9UHV8 139 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 PRG3Q9Y2Y8 225 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-202ENST00000374876 C5orf67F2Z3F1 127 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 H3BNC9 293 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 LPXNO60711 386 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 VDRP11473 427 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 PECAM1P16284 738 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-202ENST00000374876 IGFBP6P24592 240 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-202ENST00000374876 IL1R2P27930 398 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 TAX1BP1Q86VP1 789 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 TTC13Q8NBP0 860 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 SLC35B2Q8TB61 432 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 GUCD1Q96NT3 240 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 CDX2Q99626 313 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-202ENST00000374876 FRMD8P1Q9BZ68 369 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-202ENST00000374876 PLEKHA5Q9HAU0 1116 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 ITGA11Q9UKX5 1188 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 NAALADL1Q9UQQ1 740 aa16.19■□□□□ 0.18
CCDC40-202ENST00000374876 GRM6O15303 877 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 CST8O60676 142 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 RNF8O76064 485 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 FGF18O76093 207 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 RB1P06400 928 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 BRAFP15056 766 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 KCNE1P15382 129 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 CREB1P16220 341 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 KDELR1P24390 212 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 RBP5P82980 135 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 MYO1EQ12965 1108 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 TUSC3Q13454 348 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 LRRC14Q15048 493 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 VSTM1Q6UX27 236 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 KCTD6Q8NC69 237 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 BCL7CQ8WUZ0 217 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 MYLIPQ8WY64 445 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 KIF12Q96FN5 646 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 DPP3Q9NY33 737 aa16.18■□□□□ 0.18
CCDC40-202ENST00000374876 SAE1Q9UBE0 346 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-202ENST00000374876 PCSK1NQ9UHG2 260 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms