RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 SDCBP2Q9H190 292 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 TLE6Q9H808 572 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 NGRNQ9NPE2 291 aaKnown RBP7.19□□□□□ -1.26
CSDE1-204ENST00000369530 FAIMQ9NVQ4 179 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 GCNT4Q9P109 453 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 PCDHB8Q9UN66 801 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 HES2Q9Y543 173 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 TIMM22Q9Y584 194 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 SLC30A1Q9Y6M5 507 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 TRIM49BA6NDI0 452 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 LMNAP02545 664 aaKnown RBP7.19□□□□□ -1.26
CSDE1-204ENST00000369530 CLTAP09496 248 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 CLCNKBP51801 687 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 TFF2Q03403 129 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 UBXN1Q04323 297 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 NSUN2Q08J23 767 aaKnown RBP eCLIP7.19□□□□□ -1.26
CSDE1-204ENST00000369530 GPM6BQ13491 265 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 C9orf57Q5W0N0 161 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 LRRTM3Q86VH5 581 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 PEX5LQ8IYB4 626 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 FIBCD1Q8N539 461 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 OR10T2Q8NGX3 314 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 DQX1Q8TE96 717 aaKnown RBP7.19□□□□□ -1.26
CSDE1-204ENST00000369530 FAM167BQ9BTA0 163 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 INO80BQ9C086 356 aaPredicted RBP7.19□□□□□ -1.26
CSDE1-204ENST00000369530 ZDHHC7Q9NXF8 308 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 ZNHIT2Q9UHR6 403 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 MSRAQ9UJ68 235 aa7.19□□□□□ -1.26
CSDE1-204ENST00000369530 CEP290O15078 2479 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TRAFD1O14545 582 aaPredicted RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 SYN3O14994 580 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TACC1O75410 805 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TJP3O95049 919 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 CYP1A1P04798 512 aaPredicted RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 PRKCBP05771 671 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 KRT16P08779 473 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 STAG3L1P0CL83 205 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 PTPN2P17706 415 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ATF6P18850 670 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ACO1P21399 889 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ASPAP45381 313 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 NUBP1P53384 320 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 COPS2P61201 443 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 KCNJ2P63252 427 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 PDE1BQ01064 536 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 PDCD4Q53EL6 469 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ZNF394Q53GI3 561 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 SMUG1Q53HV7 270 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ATF7IP2Q5U623 682 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TMEM53Q6P2H8 277 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 IFT20Q8IY31 132 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 CSGALNACT2Q8N6G5 542 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 SPATA4Q8NEY3 305 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TRMT2BQ96GJ1 504 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 IFT74Q96LB3 600 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 LRRC1Q9BTT6 524 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 DPH5Q9H2P9 285 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TIMMDC1Q9NPL8 285 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ZNHIT6Q9NWK9 470 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 KANSL3Q9P2N6 904 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 HCFC2Q9Y5Z7 792 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 MYLKQ15746 1914 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 WDR27A2RRH5 827 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ATP11AP98196 1134 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 CCDC153Q494R4 210 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ZC2HC1CQ53FD0 456 aaPredicted RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 GIMAP1Q8WWP7 306 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 SLC7A3Q8WY07 619 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 XPO6Q96QU8 1125 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ASB7Q9H672 318 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 WDR6Q9NNW5 1121 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 SIX2Q9NPC8 291 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 SNTG2Q9NY99 539 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 PTTG2Q9NZH5 202 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 LARSQ9P2J5 1176 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 LIMA1Q9UHB6 759 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 PRRC2BQ5JSZ5 2229 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TMEM131Q92545 1883 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 NDUFA10O95299 355 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 PRCPP42785 496 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 STK4Q13043 487 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 HTR4Q13639 388 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ALCAMQ13740 583 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 INAQ16352 499 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TNFAIP8L3Q5GJ75 292 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ZNF362Q5T0B9 420 aaPredicted RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TTI2Q6NXR4 508 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 DCLRE1AQ6PJP8 1040 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 KIAA0907Q7Z7F0 614 aaPredicted RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 NELFCDQ8IXH7 590 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 SLC17A8Q8NDX2 589 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 C18orf25Q96B23 403 aaPredicted RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 ZSWIM1Q9BR11 485 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 CLK4Q9HAZ1 481 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TMLHEQ9NVH6 421 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 CACNG4Q9UBN1 327 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 CNOT8Q9UFF9 292 aaKnown RBP7.18□□□□□ -1.26
CSDE1-204ENST00000369530 STOML2Q9UJZ1 356 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 FADS3Q9Y5Q0 445 aa7.18□□□□□ -1.26
CSDE1-204ENST00000369530 TEX28O15482 410 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms