RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 IP6K3Q96PC2 410 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 EDEM2Q9BV94 578 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 SLC39A8Q9C0K1 460 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 LACRTQ9GZZ8 138 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 KLC2Q9H0B6 622 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 EHD4Q9H223 541 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 COPS7AQ9UBW8 275 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CA14Q9ULX7 337 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 BARX2Q9UMQ3 279 aaPredicted RBP4.24□□□□□ -1.73
USH2A-202ENST00000366942 PCDHA4Q9UN74 947 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 DUSP12Q9UNI6 340 aa4.24□□□□□ -1.73
USH2A-202ENST00000366942 CPDO75976 1380 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 UBXN7O94888 489 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 FAM107AO95990 144 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 KRT7P08729 469 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 CPA3P15088 417 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 TCN2P20062 427 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 CYP2A7P20853 494 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PAICSP22234 425 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 CYP2C18P33260 490 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 GPC1P35052 558 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 GPR1P46091 355 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 AVPR1BP47901 424 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 NLRP12P59046 1061 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 ADAM9Q13443 819 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SMAD4Q13485 552 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 CTTNQ14247 550 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 SETDB1Q15047 1291 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 DUSP28Q4G0W2 176 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 C6orf10Q5SRN2 563 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 TXNDC8Q6A555 127 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 RTL10Q7L3V2 364 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 MIB1Q86YT6 1006 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 HELQQ8TDG4 1101 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 LARP4BQ92615 738 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 GJA10Q969M2 543 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PLIN2Q99541 437 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 S100A13Q99584 98 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PRMT1Q99873 361 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 PAIP2Q9BPZ3 127 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 ILKAPQ9H0C8 392 aaPredicted RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 CDH19Q9H159 772 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 CDHR5Q9HBB8 845 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SETD4Q9NVD3 440 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 TMEM161AQ9NX61 479 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 A0A087X0B3 334 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 FAM170BA6NMN3 283 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 ENO4A6NNW6 628 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 GRAP2O75791 330 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 GSNP06396 782 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 MYBP10242 640 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PTPRAP18433 802 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 VCAM1P19320 739 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 S100GP29377 79 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 CENPAP49450 140 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 ALDH18A1P54886 795 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 PSMD4P55036 377 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 LRMPQ12912 555 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 MRPL49Q13405 166 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 ANO7Q6IWH7 933 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 TSHZ1Q6ZSZ6 1077 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 ARMCX6Q7L4S7 300 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 RASAL3Q86YV0 1011 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 ZADH2Q8N4Q0 377 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 CYP2W1Q8TAV3 490 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SNX33Q8WV41 574 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 DLG3Q92796 817 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SLC22A18Q96BI1 424 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SUCLG2Q96I99 432 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 OSBPL10Q9BXB5 764 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 MYLK2Q9H1R3 596 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 UBE2ZQ9H832 354 aaPredicted RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 MANSC1Q9H8J5 431 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SDHAF3Q9NRP4 125 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 VPS45Q9NRW7 570 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 TMEM63CQ9P1W3 806 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 DNMT3LQ9UJW3 386 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 SYNDIG1LA6NDD5 238 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 TBX3O15119 743 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 RPP40O75818 363 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 IPO13O94829 963 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 CAMTA2O94983 1202 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 TNFP01375 233 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 PABPC4LP0CB38 370 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 RBP3P10745 1247 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 HOXB2P14652 356 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SDSP20132 328 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 DRD1P21728 446 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 MZF1P28698 734 aaPredicted RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 CASQ1P31415 396 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 EIF4A3P38919 411 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 SMAD3P84022 425 aaKnown RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 PLOD1Q02809 727 aaPredicted RBP4.23□□□□□ -1.73
USH2A-202ENST00000366942 UBXN1Q04323 297 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 BCL2L1Q07817 233 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 BIKQ13323 160 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 QRICH1Q2TAL8 776 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 SFMBT2Q5VUG0 894 aa4.23□□□□□ -1.73
USH2A-202ENST00000366942 ELOA2Q8IYF1 753 aaPredicted RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms