RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 EHD2Q9NZN4 543 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 CEP104O60308 925 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 ZDHHC11BP0C7U3 371 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 PLD1Q13393 1074 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 CYP4V2Q6ZWL3 525 aaPredicted RBP20.75■□□□□ 0.91
CLN3-205ENST00000359984 DQX1Q8TE96 717 aaKnown RBP20.75■□□□□ 0.91
CLN3-205ENST00000359984 LMAN2LQ9H0V9 348 aa20.75■□□□□ 0.91
CLN3-205ENST00000359984 PDE4DIPQ5VU43 2346 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 MYO7AQ13402 2215 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 SYNJ2BP-COX16A0A087WUM0 186 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 PER2O15055 1255 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 PRPSAP2O60256 369 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 KRT7P08729 469 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 RDXP35241 583 aaKnown RBP20.74■□□□□ 0.91
CLN3-205ENST00000359984 DEUP1Q05D60 604 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 NME3Q13232 169 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 TAF12Q16514 161 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 WHAMMP3Q1A5X7 153 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 SMTNL2Q2TAL5 461 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 AADACL2Q6P093 401 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 TAC4Q86UU9 113 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 SLC22A17Q8WUG5 538 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 PSMG2Q969U7 264 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 ACSF2Q96CM8 615 aaPredicted RBP20.74■□□□□ 0.91
CLN3-205ENST00000359984 PGAP3Q96FM1 320 aaPredicted RBP20.74■□□□□ 0.91
CLN3-205ENST00000359984 TRMT2BQ96GJ1 504 aaKnown RBP20.74■□□□□ 0.91
CLN3-205ENST00000359984 PIGVQ9NUD9 493 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 KLHL11Q9NVR0 708 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 CLIC5Q9NZA1 410 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 SMARCAL1Q9NZC9 954 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 COX16Q9P0S2 106 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 NUDT5Q9UKK9 219 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 MYO16Q9Y6X6 1858 aa20.74■□□□□ 0.91
CLN3-205ENST00000359984 ZNF638Q14966 1978 aaKnown RBP20.73■□□□□ 0.91
CLN3-205ENST00000359984 PDE2AO00408 941 aaPredicted RBP20.73■□□□□ 0.91
CLN3-205ENST00000359984 C1RP00736 705 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 PSEN1P49768 467 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 KCNT1Q5JUK3 1230 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 ADGRD2Q7Z7M1 963 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 RNF139Q8WU17 664 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 OVCA2Q8WZ82 227 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 DDIT4Q9NX09 232 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 RFXAPO00287 272 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 LRG1P02750 347 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 RARAP10276 462 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 RARGP13631 454 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 EPCAMP16422 314 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 ITIH5Q86UX2 942 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 FAM131BQ86XD5 332 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 RASGEF1CQ8N431 466 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 EXD1Q8NHP7 514 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 CASP10Q92851 521 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 ZNF512Q96ME7 567 aaPredicted RBP20.73■□□□□ 0.91
CLN3-205ENST00000359984 FAM204AQ9H8W3 233 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 WDR6Q9NNW5 1121 aaKnown RBP20.73■□□□□ 0.91
CLN3-205ENST00000359984 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.73■□□□□ 0.91
CLN3-205ENST00000359984 DDX56Q9NY93 547 aaKnown RBP20.73■□□□□ 0.91
CLN3-205ENST00000359984 ASB3Q9Y575 518 aa20.73■□□□□ 0.91
CLN3-205ENST00000359984 PI4K2BG5E9Z4 385 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 ZRANB2O95218 330 aaKnown RBP eCLIP20.72■□□□□ 0.91
CLN3-205ENST00000359984 IGLV3-25P01717 112 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 BOLA3Q53S33 107 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 ZFYVE27Q5T4F4 411 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 MSANTD2Q6P1R3 559 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 RBM23Q86U06 439 aaKnown RBP20.72■□□□□ 0.91
CLN3-205ENST00000359984 RAPGEF5Q92565 580 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 SMOC2Q9H3U7 446 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 PLEKHA4Q9H4M7 779 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 MAN1C1Q9NR34 630 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 RNF14Q9UBS8 474 aa20.72■□□□□ 0.91
CLN3-205ENST00000359984 F9P00740 461 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 KRT1P04264 644 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 RALAP11233 206 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 SNX30Q5VWJ9 437 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 RSRC2Q7L4I2 434 aaKnown RBP20.71■□□□□ 0.91
CLN3-205ENST00000359984 RCOR2Q8IZ40 523 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 CCDC185Q8N715 623 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 PDZD8Q8NEN9 1154 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 CMASQ8NFW8 434 aaPredicted RBP20.71■□□□□ 0.91
CLN3-205ENST00000359984 ACTRT1Q8TDG2 376 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 HSPH1Q92598 858 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 RNF25Q96BH1 459 aaPredicted RBP20.71■□□□□ 0.91
CLN3-205ENST00000359984 CARD6Q9BX69 1037 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 ZNF334Q9HCZ1 680 aaPredicted RBP20.71■□□□□ 0.91
CLN3-205ENST00000359984 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLN3-205ENST00000359984 SFMBT1Q9UHJ3 866 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 TRANK1O15050 2925 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 ZNF840PA6NDX5 716 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 EIF4EBP2Q13542 120 aaPredicted RBP20.71■□□□□ 0.91
CLN3-205ENST00000359984 PPM1LQ5SGD2 360 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 CCDC181Q5TID7 509 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 RTL10Q7L3V2 364 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 TEKT4Q8WW24 435 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 SNRNP25Q9BV90 132 aaKnown RBP20.71■□□□□ 0.91
CLN3-205ENST00000359984 GPATCH2LQ9NWQ4 482 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 TRPM5Q9NZQ8 1165 aa20.71■□□□□ 0.91
CLN3-205ENST00000359984 UXTQ9UBK9 157 aaPredicted RBP20.71■□□□□ 0.91
CLN3-205ENST00000359984 TTC7AQ9ULT0 858 aaPredicted RBP20.71■□□□□ 0.91
CLN3-205ENST00000359984 LRRD1A4D1F6 860 aa20.7■□□□□ 0.9
CLN3-205ENST00000359984 IRAK2O43187 625 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms