RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 PAX7P23759 505 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 PWP1Q13610 501 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 FAM98BQ52LJ0 330 aaKnown RBP15.26■□□□□ 0.03
CHD4-201ENST00000357008 DHFR2Q86XF0 187 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 ZCCHC7Q8N3Z6 543 aaKnown RBP15.26■□□□□ 0.03
CHD4-201ENST00000357008 RPRD1AQ96P16 312 aaPredicted RBP15.26■□□□□ 0.03
CHD4-201ENST00000357008 PAIP1Q9H074 479 aaKnown RBP15.26■□□□□ 0.03
CHD4-201ENST00000357008 DLC1Q96QB1 1528 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 CEMIPQ8WUJ3 1361 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 LINC00854A0A1B0GVQ3 168 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 IFNA14P01570 189 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 ARP10275 920 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 CCT8P50990 548 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 ANGPT1Q15389 498 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 TCHHL1Q5QJ38 904 aaPredicted RBP15.26■□□□□ 0.03
CHD4-201ENST00000357008 GRTP1Q5TC63 336 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 ERO1BQ86YB8 467 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 VANGL2Q9ULK5 521 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 SH3BP1Q9Y3L3 701 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 MAPTP10636 758 aaKnown RBP15.26■□□□□ 0.03
CHD4-201ENST00000357008 IRF1P10914 325 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 NCKAP1LP55160 1127 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 DDX39BQ13838 428 aaKnown RBP15.26■□□□□ 0.03
CHD4-201ENST00000357008 C16orf72Q14CZ0 275 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 RINLQ6ZS11 566 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 MYO1HQ8N1T3 1032 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 EMC1Q8N766 993 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 ATG16L2Q8NAA4 619 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 POLG2Q9UHN1 485 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 DAPK2Q9UIK4 370 aa15.26■□□□□ 0.03
CHD4-201ENST00000357008 CLOCKO15516 846 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 ZNF862O60290 1169 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 CBX6O95503 412 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 ZNF682O95780 498 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 ODC1P11926 461 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 ME2P23368 584 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 DNAAF5Q86Y56 855 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 OR8H2Q8N162 312 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 OR6Y1Q8NGX8 325 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 TMEM176AQ96HP8 235 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 DUSP9Q99956 384 aaKnown RBP15.25■□□□□ 0.03
CHD4-201ENST00000357008 VTA1Q9NP79 307 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 MYO3AQ8NEV4 1616 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 SALL3Q9BXA9 1300 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 ADGRB3O60242 1522 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 CSE1LP55060 971 aaKnown RBP15.25■□□□□ 0.03
CHD4-201ENST00000357008 IL5RAQ01344 420 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 SAMD3Q8N6K7 520 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 PRCCQ92733 491 aaPredicted RBP15.25■□□□□ 0.03
CHD4-201ENST00000357008 FAM120BQ96EK7 910 aaKnown RBP15.25■□□□□ 0.03
CHD4-201ENST00000357008 APOL2Q9BQE5 337 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 BAIAP3O94812 1187 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 SLC16A1P53985 500 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 PTPN11Q06124 597 aaPredicted RBP15.25■□□□□ 0.03
CHD4-201ENST00000357008 CCDC33Q8N5R6 958 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 GTF3C2Q8WUA4 911 aaPredicted RBP15.25■□□□□ 0.03
CHD4-201ENST00000357008 NSMCE2Q96MF7 247 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 GGA2Q9UJY4 613 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.25■□□□□ 0.03
CHD4-201ENST00000357008 TBC1D12O60347 775 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 FBXO21O94952 628 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 JCHAINP01591 159 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 TNFRSF8P28908 595 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 VAC14Q08AM6 782 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 ZNF177Q13360 481 aaPredicted RBP15.25■□□□□ 0.03
CHD4-201ENST00000357008 HEATR4Q86WZ0 1026 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 SLC7A5P2Q9GIP4 190 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 DDHD2O94830 711 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 C6orf222P0C671 652 aaPredicted RBP15.25■□□□□ 0.03
CHD4-201ENST00000357008 CYP2F1P24903 491 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 SLC11A2P49281 568 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 FAM131BQ86XD5 332 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 FICDQ9BVA6 458 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 CYP39A1Q9NYL5 469 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 RABGEF1Q9UJ41 708 aa15.25■□□□□ 0.03
CHD4-201ENST00000357008 C1orf232A0A0U1RR37 186 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 TDRD10Q5VZ19 366 aaKnown RBP15.24■□□□□ 0.03
CHD4-201ENST00000357008 RIPOR1Q6ZS17 1223 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 C4orf19Q8IY42 314 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 TBCBQ99426 244 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 DDX3XO00571 662 aaKnown RBP eCLIP15.24■□□□□ 0.037e-17■■□□□ 14
CHD4-201ENST00000357008 PRRG1O14668 218 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 PSMB9P28065 219 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 SSTR1P30872 391 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 XRCC4Q13426 336 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 AMHR2Q16671 573 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 SVOPQ8N4V2 548 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 ZKSCAN4Q969J2 545 aaPredicted RBP15.24■□□□□ 0.03
CHD4-201ENST00000357008 RNPEPL1Q9HAU8 725 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.24■□□□□ 0.03
CHD4-201ENST00000357008 PHGDHO43175 533 aaKnown RBP15.24■□□□□ 0.03
CHD4-201ENST00000357008 PSMA3P25788 255 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 MYL6P60660 151 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 C1DQ13901 141 aaKnown RBP15.24■□□□□ 0.03
CHD4-201ENST00000357008 CYP4Z1Q86W10 505 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 CLVS1Q8IUQ0 354 aaPredicted RBP15.24■□□□□ 0.03
CHD4-201ENST00000357008 DDX18Q9NVP1 670 aaKnown RBP15.24■□□□□ 0.03
CHD4-201ENST00000357008 ADAM30Q9UKF2 790 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 NEXMIFQ5QGS0 1516 aa15.24■□□□□ 0.03
CHD4-201ENST00000357008 CRTAMO95727 393 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms