RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 OLFML2BQ68BL8 750 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 RETSATQ6NUM9 610 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 SH2D3CQ8N5H7 860 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 ZNF513Q8N8E2 541 aaPredicted RBP6.65□□□□□ -1.34
UPF2-201ENST00000356352 GMCL1P1Q8NEA9 526 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 FAM172AQ8WUF8 416 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 FAM120BQ96EK7 910 aaKnown RBP6.65□□□□□ -1.34
UPF2-201ENST00000356352 MAGED4Q96JG8 741 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 ANKRD27Q96NW4 1050 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 TAAR1Q96RJ0 339 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 C1QTNF7Q9BXJ2 289 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 CEP44Q9C0F1 390 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 KLHL31Q9H511 634 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 NEK6Q9HC98 313 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 AP4E1Q9UPM8 1137 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 MAPRE3Q9UPY8 281 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 ACOT9Q9Y305 439 aa6.65□□□□□ -1.34
UPF2-201ENST00000356352 E2F8A0AVK6 867 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 SNAP23O00161 211 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 RAD51BO15315 384 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 MSH4O15457 936 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 RGS5O15539 181 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 CPSF4O95639 269 aaKnown RBP6.65□□□□□ -1.35
UPF2-201ENST00000356352 NFICP08651 508 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 FXR1P51114 621 aaKnown RBP eCLIP6.65□□□□□ -1.35
UPF2-201ENST00000356352 RPS6P62753 249 aaKnown RBP6.65□□□□□ -1.35
UPF2-201ENST00000356352 PRKAA1Q13131 559 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 SLC29A2Q14542 456 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 SCUBE1Q8IWY4 988 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 ATG4CQ96DT6 458 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 V9GYQ6 96 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 A0A0G2JLW4 131 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 SMIM31A0A1B0GVY4 71 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 GUCY1B2O75343 617 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 SKAP2O75563 359 aaPredicted RBP6.65□□□□□ -1.35
UPF2-201ENST00000356352 UBTFL6P0CB48 400 aaPredicted RBP6.65□□□□□ -1.35
UPF2-201ENST00000356352 ZNF24P17028 368 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 CRABP2P29373 138 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 AXLP30530 894 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 SERPINB5P36952 375 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 HSD17B3P37058 310 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 HALP42357 657 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 PPP4CP60510 307 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 NAA20P61599 178 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 PCNX4Q63HM2 1172 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 TMEM26Q6ZUK4 368 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 KRT77Q7Z794 578 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 C11orf74Q86VG3 221 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 CLYBLQ8N0X4 340 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 LZTR1Q8N653 840 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 ZNF655Q8N720 491 aaPredicted RBP6.65□□□□□ -1.35
UPF2-201ENST00000356352 ZNF614Q8N883 585 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 TDRD5Q8NAT2 981 aaKnown RBP6.65□□□□□ -1.35
UPF2-201ENST00000356352 PNKPQ96T60 521 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 YME1L1Q96TA2 773 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 TBCBQ99426 244 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 MRPL9Q9BYD2 267 aaKnown RBP6.65□□□□□ -1.35
UPF2-201ENST00000356352 KLHL4Q9C0H6 718 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 THAP2Q9H0W7 228 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 DEFB129Q9H1M3 183 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 GPAMQ9HCL2 828 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 HPS4Q9NQG7 708 aa6.65□□□□□ -1.35
UPF2-201ENST00000356352 AKAP7Q9P0M2 348 aaPredicted RBP6.65□□□□□ -1.35
UPF2-201ENST00000356352 C2CD2LO14523 706 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 RTN3O95197 1032 aaPredicted RBP6.64□□□□□ -1.35
UPF2-201ENST00000356352 GYPCP04921 128 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 OR56A5P0C7T3 313 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 DDR2Q16832 855 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 FAM98BQ52LJ0 330 aaKnown RBP6.64□□□□□ -1.35
UPF2-201ENST00000356352 CASP12Q6UXS9 341 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 SPOCD1Q6ZMY3 1216 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 STRA8Q7Z7C7 330 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 SETD9Q8NE22 299 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 DNERQ8NFT8 737 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 MCOLN3Q8TDD5 553 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 ACTRT1Q8TDG2 376 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 TMEM176AQ96HP8 235 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 KLF6Q99612 283 aaPredicted RBP6.64□□□□□ -1.35
UPF2-201ENST00000356352 PI4K2AQ9BTU6 479 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 RABGEF1Q9UJ41 708 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 TRHDEQ9UKU6 1024 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 PNMA8BQ9ULN7 279 aaPredicted RBP6.64□□□□□ -1.35
UPF2-201ENST00000356352 ZMYND8Q9ULU4 1186 aaPredicted RBP6.64□□□□□ -1.35
UPF2-201ENST00000356352 CRYL1Q9Y2S2 319 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 NEXMIFQ5QGS0 1516 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 MROH7Q68CQ1 1323 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 LOC100653049A0A140TA62 436 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 SLC12A8A0AV02 714 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 KRT34O76011 436 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 B3GAT3O94766 335 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 RARGP13631 454 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 TFE3P19532 575 aaPredicted RBP6.64□□□□□ -1.35
UPF2-201ENST00000356352 ATP6V1C1P21283 382 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 PON1P27169 355 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 PBLDP30039 288 aaPredicted RBP6.64□□□□□ -1.35
UPF2-201ENST00000356352 SKIV2L2P42285 1042 aaKnown RBP6.64□□□□□ -1.35
UPF2-201ENST00000356352 NPY2RP49146 381 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 MGAT5Q09328 741 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 GRIK3Q13003 919 aa6.64□□□□□ -1.35
UPF2-201ENST00000356352 TSNQ15631 228 aaKnown RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms