RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ARHGAP10A1A4S6 786 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 ZNF195O14628 629 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 BIRC5O15392 142 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 TOM1L1O75674 476 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 KLHL2O95198 593 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 P4HBP07237 508 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 FGF3P11487 239 aaPredicted RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 IDH3AP50213 366 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 NR1H2P55055 460 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 HDAC4P56524 1084 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 SLC25A11Q02978 314 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 TCP10Q12799 353 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 CUL2Q13617 745 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 ADGRE1Q14246 886 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 PDK1Q15118 436 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 AOC3Q16853 763 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 FAM102BQ5T8I3 360 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 NCCRP1Q6ZVX7 275 aaPredicted RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 SH3BP5LQ7L8J4 393 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 POLNQ7Z5Q5 900 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 RNF168Q8IYW5 571 aaPredicted RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 NDUFAF2Q8N183 169 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 PIWIL2Q8TC59 973 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 ZNF512Q96ME7 567 aaPredicted RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 PNPOQ9NVS9 261 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 DDX56Q9NY93 547 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 C6orf203Q9P0P8 240 aaPredicted RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 ZNF180Q9UJW8 692 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 EMCNQ9ULC0 261 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 AGTPBP1Q9UPW5 1226 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 GNEQ9Y223 722 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 APOBEC2Q9Y235 224 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 ZNF711Q9Y462 761 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 AK5Q9Y6K8 562 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 ZBTB14O43829 449 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 C4BPAP04003 597 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 OATP04181 439 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 PDGFRBP09619 1106 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 FAM58BPP0C7Q3 252 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 THRAP10827 490 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 PRKCHP24723 683 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 YWHABP31946 246 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 CRHR1P34998 444 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 RPL10AP62906 217 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 MRPS22P82650 360 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 TAZQ16635 292 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 ZACNQ401N2 412 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 SLC44A4Q53GD3 710 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 FASTKD1Q53R41 847 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 CYP4A22Q5TCH4 519 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 PDPK2PQ6A1A2 396 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 C16orf46Q6P387 395 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 DNAJC24Q6P3W2 148 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 ELMSAN1Q6PJG2 1045 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 ARCQ7LC44 396 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 PTF1AQ7RTS3 328 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 WDR75Q8IWA0 830 aaKnown RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 KIAA0319LQ8IZA0 1049 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 GPD1LQ8N335 351 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 IL31RAQ8NI17 732 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 GRIN3AQ8TCU5 1115 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 SORT1Q99523 831 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 RIT2Q99578 217 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 OXCT2Q9BYC2 517 aaPredicted RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 Q9H521 79 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 NRDE2Q9H7Z3 1164 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 TBCCD1Q9NVR7 557 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 BARX2Q9UMQ3 279 aaPredicted RBP7.03□□□□□ -1.28
VPS39-202ENST00000348544 EXOC7Q9UPT5 735 aa7.03□□□□□ -1.28
VPS39-202ENST00000348544 COL16A1Q07092 1604 aaPredicted RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 KANSL1LA0AUZ9 987 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 SH3PXD2BA1X283 911 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 GNPATO15228 680 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 DKC1O60832 514 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS39-202ENST00000348544 SPAG6O75602 509 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 RPS6KA4O75676 772 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 COL6A2P12110 1019 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 COX4I1P13073 169 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 KDELR1P24390 212 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 SLC1A6P48664 564 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 ENTPD1P49961 510 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 EIF3EP60228 445 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 PFKPQ01813 784 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 GSTM4Q03013 218 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 TAF5Q15542 800 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 ANKDD1AQ495B1 522 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 WDR44Q5JSH3 913 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 MROH9Q5TGP6 573 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 TRMT10BQ6PF06 316 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 DCUN1D2Q6PH85 259 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 DHRS4L2Q6PKH6 230 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 POTEHQ6S545 545 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 NPNTQ6UXI9 565 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 ERI1Q8IV48 349 aaKnown RBP7.02□□□□□ -1.29
VPS39-202ENST00000348544 NIPA2Q8N8Q9 360 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 ZNF606Q8WXB4 792 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 HSPH1Q92598 858 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 MXRA8Q9BRK3 442 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 KCNH7Q9NS40 1196 aa7.02□□□□□ -1.29
VPS39-202ENST00000348544 ARHGAP28Q9P2N2 729 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms