RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 PYGLP06737 847 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 KRT10P13645 584 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 ETS1P14921 441 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 AOC1P19801 751 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 CDKN2BP42772 138 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 PLCB3Q01970 1234 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 ARHGAP1Q07960 439 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 CFAP157Q5JU67 520 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 SPATA24Q86W54 205 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 ZSWIM2Q8NEG5 633 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 PPTC7Q8NI37 304 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 E2F7Q96AV8 911 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 LENG1Q96BZ8 264 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-202ENST00000347617 THTPAQ9BU02 230 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 ABHD16BQ9H3Z7 469 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 Q9H521 79 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.46■□□□□ 0.23
HMGA1-202ENST00000347617 K7ERI5 159 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 RNASEH1O60930 286 aaKnown RBP16.46■□□□□ 0.22
HMGA1-202ENST00000347617 ASLP04424 464 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 GNA15P30679 374 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 CCNFP41002 786 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 EFTUD2Q15029 972 aaKnown RBP eCLIP16.46■□□□□ 0.224e-21■■■■■ 30.7
HMGA1-202ENST00000347617 ZNF484Q5JVG2 852 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 HP1BP3Q5SSJ5 553 aaPredicted RBP16.46■□□□□ 0.22
HMGA1-202ENST00000347617 IQSEC1Q6DN90 963 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 ARCQ7LC44 396 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 TAS1R3Q7RTX0 852 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 TTC7BQ86TV6 843 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 PRPF39Q86UA1 669 aaKnown RBP16.46■□□□□ 0.22
HMGA1-202ENST00000347617 DEPTORQ8TB45 409 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 PRR11Q96HE9 360 aaPredicted RBP16.46■□□□□ 0.22
HMGA1-202ENST00000347617 TTC1Q99614 292 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 PDGFCQ9NRA1 345 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 ERAP1Q9NZ08 941 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 SIRPGQ9P1W8 387 aa16.46■□□□□ 0.22
HMGA1-202ENST00000347617 FAM237BA0A1B0GVD1 139 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 CASQ2O14958 399 aaPredicted RBP16.45■□□□□ 0.22
HMGA1-202ENST00000347617 ADCY3O60266 1144 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 SNAI1O95863 264 aaPredicted RBP16.45■□□□□ 0.22
HMGA1-202ENST00000347617 LDHAP00338 332 aaKnown RBP16.45■□□□□ 0.22
HMGA1-202ENST00000347617 IFNB1P01574 187 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 SNRPAP09012 282 aaKnown RBP16.45■□□□□ 0.22
HMGA1-202ENST00000347617 MYL4P12829 197 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 ZNF157P51786 506 aaPredicted RBP16.45■□□□□ 0.22
HMGA1-202ENST00000347617 CHN2P52757 468 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 SOX10P56693 466 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 POU5F1BQ06416 359 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 ANKRD20A4Q4UJ75 823 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 FNBP1LQ5T0N5 605 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 RGMBQ6NW40 437 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 KLC3Q6P597 504 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 SLC39A4Q6P5W5 647 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 BBS12Q6ZW61 710 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 SAPCD2Q86UD0 394 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 SLC26A11Q86WA9 606 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 TREML1Q86YW5 311 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 THNSL1Q8IYQ7 743 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 RSAD2Q8WXG1 361 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 TMEM143Q96AN5 459 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 ZFRQ96KR1 1074 aaKnown RBP16.45■□□□□ 0.22
HMGA1-202ENST00000347617 DDX50Q9BQ39 737 aaKnown RBP16.45■□□□□ 0.22
HMGA1-202ENST00000347617 TINF2Q9BSI4 451 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 ZNF518BQ9C0D4 1074 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 EBF3Q9H4W6 596 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 LMCD1Q9NZU5 365 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 THEGQ9P2T0 379 aa16.45■□□□□ 0.22
HMGA1-202ENST00000347617 ZBTB42B2RXF5 422 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 PI4K2BG5E9Z4 385 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 TRDMT1O14717 391 aaKnown RBP16.44■□□□□ 0.22
HMGA1-202ENST00000347617 HNRNPDLO14979 420 aaKnown RBP16.44■□□□□ 0.22
HMGA1-202ENST00000347617 KRT7P08729 469 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 HOXC6P09630 235 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 HOXD8P13378 290 aaPredicted RBP16.44■□□□□ 0.22
HMGA1-202ENST00000347617 ACO1P21399 889 aaKnown RBP16.44■□□□□ 0.22
HMGA1-202ENST00000347617 MMP8P22894 467 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 MAGEA8P43361 318 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 PSMD6Q15008 389 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 BBS9Q3SYG4 887 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 ZPBP2Q6X784 338 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 ALYREFQ86V81 257 aaKnown RBP16.44■□□□□ 0.22
HMGA1-202ENST00000347617 POMGNT1Q8WZA1 660 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 NLRP4Q96MN2 994 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 SRPK1Q96SB4 655 aaKnown RBP16.44■□□□□ 0.22
HMGA1-202ENST00000347617 TMEM121Q9BTD3 319 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 KIFC3Q9BVG8 833 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 C2orf40Q9H1Z8 148 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 TIMMDC1Q9NPL8 285 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.44■□□□□ 0.221e-6■■■■■ 47.4
HMGA1-202ENST00000347617 ARMCX1Q9P291 453 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 XPO7Q9UIA9 1087 aaKnown RBP16.44■□□□□ 0.22
HMGA1-202ENST00000347617 ITGA11Q9UKX5 1188 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 PLLPQ9Y342 182 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 MCM3APO60318 1980 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 COL1A2P08123 1366 aa16.44■□□□□ 0.22
HMGA1-202ENST00000347617 GOLGA8RI6L899 631 aa16.43■□□□□ 0.22
HMGA1-202ENST00000347617 EXTL3O43909 919 aa16.43■□□□□ 0.22
HMGA1-202ENST00000347617 PYGBP11216 843 aa16.43■□□□□ 0.22
HMGA1-202ENST00000347617 RPL5P46777 297 aaKnown RBP16.43■□□□□ 0.22
HMGA1-202ENST00000347617 TMPRSS15P98073 1019 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms