RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HMBSP08397 361 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 ATP6V1B1P15313 513 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 CXCR3P49682 368 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 TRIP10Q15642 601 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 PDCD2Q16342 344 aaPredicted RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 N4BP2L1Q5TBK1 243 aaPredicted RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 METTL7BQ6UX53 244 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 BZW1Q7L1Q6 419 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 AGGF1Q8N302 714 aaeCLIP12.36□□□□□ -0.43
USP1-201ENST00000339950 PPWD1Q96BP3 646 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 L3MBTL3Q96JM7 780 aaPredicted RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 SDCBP2Q9H190 292 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 AP4E1Q9UPM8 1137 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 DDX60LQ5H9U9 1706 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 PLSCR1O15162 318 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 PMPCBO75439 489 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 ARF4P18085 180 aaPredicted RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 TSPAN8P19075 237 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 HSP90AA5PQ58FG0 334 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 ATG16L1Q676U5 607 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 PHF13Q86YI8 300 aaPredicted RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 C12orf56Q8IXR9 622 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 SNRNP27Q8WVK2 155 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 EBF4Q9BQW3 602 aa12.36□□□□□ -0.43
USP1-201ENST00000339950 PAPOLBQ9NRJ5 636 aaKnown RBP12.36□□□□□ -0.43
USP1-201ENST00000339950 NAV1Q8NEY1 1877 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 GON4LQ3T8J9 2241 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 PHGDHO43175 533 aaKnown RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 HUS1O60921 280 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 ASMTLO95671 621 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 ZBTB48P10074 688 aaPredicted RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 ETS2P15036 469 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 GSCP56915 257 aaPredicted RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 PDK4Q16654 411 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 MAP1SQ66K74 1059 aaPredicted RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 MFSD5Q6N075 450 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 CDHR3Q6ZTQ4 885 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 WDTC1Q8N5D0 677 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 STKLD1Q8NE28 680 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 SMARCAD1Q9H4L7 1026 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 ANLNQ9NQW6 1124 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 NENFQ9UMX5 172 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 SHOC2Q9UQ13 582 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 V9GYQ6 96 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 CLUHO75153 1309 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 PAPPAQ13219 1627 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 ALOX15BO15296 676 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 PAPSS1O43252 624 aaPredicted RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 DCXO43602 365 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 BUD23O43709 281 aaKnown RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 MAP3K7CLP57077 242 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 PLIN5Q00G26 463 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 CYP1B1Q16678 543 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 CLNKQ7Z7G1 428 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 FAM167AQ96KS9 214 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 CNPY3Q9BT09 278 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 DHX33Q9H6R0 707 aaKnown RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 RABGEF1Q9UJ41 708 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 TLK1Q9UKI8 766 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 NOD1Q9Y239 953 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 MYO9BQ13459 2157 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 PRR5-ARHGAP8B1AHC4 643 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 C19orf81C9J6K1 198 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 TPST1O60507 370 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 ZWINTO95229 277 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 IREB2P48200 963 aaKnown RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 ARHGAP8P85298 464 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 ADIGQ0VDE8 80 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 MMEL1Q495T6 779 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 FASTKD1Q53R41 847 aaKnown RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 NIPA1Q7RTP0 329 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 IPMKQ8NFU5 416 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 OLIG1Q8TAK6 271 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 UCMAQ8WVF2 138 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 C7orf43Q8WVR3 580 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 SCG3Q8WXD2 468 aaKnown RBP12.35□□□□□ -0.43
USP1-201ENST00000339950 GMLQ99445 158 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 TUBGCP4Q9UGJ1 667 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 ZNF711Q9Y462 761 aa12.35□□□□□ -0.43
USP1-201ENST00000339950 NCAM1P13591 858 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 NELFEP18615 380 aaKnown RBP12.34□□□□□ -0.43
USP1-201ENST00000339950 CYP2B6P20813 491 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 DLG2Q15700 870 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 SPDYCQ5MJ68 293 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 SLC26A11Q86WA9 606 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 COLGALT1Q8NBJ5 622 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 C2orf40Q9H1Z8 148 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 ERAP1Q9NZ08 941 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 ADA2Q9NZK5 511 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 H3BRB1 525 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 ACKR2O00590 384 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 LYPLA2O95372 231 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 GSTA2P09210 222 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 C6orf222P0C671 652 aaPredicted RBP12.34□□□□□ -0.43
USP1-201ENST00000339950 SURF1Q15526 300 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 CGB2Q6NT52 195 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 IZUMO2Q6UXV1 221 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 TP53INP2Q8IXH6 220 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 REPS2Q8NFH8 660 aa12.34□□□□□ -0.43
USP1-201ENST00000339950 NLGN2Q8NFZ4 835 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms