RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 INTUQ9ULD6 942 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 SCINQ9Y6U3 715 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 C2orf16Q68DN1 1984 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 DAB1O75553 588 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 OLFM2O95897 454 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 PFKLP17858 780 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 MATKP42679 507 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 KRT83P78385 493 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 KLHDC10Q6PID8 442 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 TADA2BQ86TJ2 420 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 MCEEQ96PE7 176 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 NACA2Q9H009 215 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 MRPL47Q9HD33 250 aaKnown RBP23.18■■□□□ 1.3
SDC3-202ENST00000339394 LUC7LQ9NQ29 371 aaKnown RBP23.18■■□□□ 1.3
SDC3-202ENST00000339394 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.18■■□□□ 1.3
SDC3-202ENST00000339394 THEGQ9P2T0 379 aa23.18■■□□□ 1.3
SDC3-202ENST00000339394 TRAV19A0A0A6YYK7 116 aa23.17■■□□□ 1.3
SDC3-202ENST00000339394 MDM4O15151 490 aa23.17■■□□□ 1.3
SDC3-202ENST00000339394 CKMP06732 381 aa23.17■■□□□ 1.3
SDC3-202ENST00000339394 GBP2P32456 591 aaPredicted RBP23.17■■□□□ 1.3
SDC3-202ENST00000339394 NOS2P35228 1153 aa23.17■■□□□ 1.3
SDC3-202ENST00000339394 AVPR1AP37288 418 aa23.17■■□□□ 1.3
SDC3-202ENST00000339394 TRNP1Q6NT89 227 aa23.17■■□□□ 1.3
SDC3-202ENST00000339394 DCUN1D2Q6PH85 259 aa23.17■■□□□ 1.3
SDC3-202ENST00000339394 OLA1Q9NTK5 396 aaKnown RBP23.17■■□□□ 1.3
SDC3-202ENST00000339394 DNMT3LQ9UJW3 386 aa23.17■■□□□ 1.3
SDC3-202ENST00000339394 TFR2Q9UP52 801 aa23.17■■□□□ 1.3
SDC3-202ENST00000339394 C2CD4BA6NLJ0 364 aa23.16■■□□□ 1.3
SDC3-202ENST00000339394 LAMP2P13473 410 aa23.16■■□□□ 1.3
SDC3-202ENST00000339394 SP100P23497 879 aaPredicted RBP23.16■■□□□ 1.3
SDC3-202ENST00000339394 EFEMP1Q12805 493 aa23.16■■□□□ 1.3
SDC3-202ENST00000339394 OTOP3Q7RTS5 596 aa23.16■■□□□ 1.3
SDC3-202ENST00000339394 ZSCAN18Q8TBC5 510 aaPredicted RBP23.16■■□□□ 1.3
SDC3-202ENST00000339394 DDX23Q9BUQ8 820 aaKnown RBP23.16■■□□□ 1.3
SDC3-202ENST00000339394 NUP85Q9BW27 656 aa23.16■■□□□ 1.3
SDC3-202ENST00000339394 PHF7Q9BWX1 381 aaPredicted RBP23.16■■□□□ 1.3
SDC3-202ENST00000339394 SFMBT1Q9UHJ3 866 aa23.16■■□□□ 1.3
SDC3-202ENST00000339394 FAM50BQ9Y247 325 aa23.16■■□□□ 1.3
SDC3-202ENST00000339394 USTQ9Y2C2 406 aa23.16■■□□□ 1.3
SDC3-202ENST00000339394 ADGRG1Q9Y653 693 aa23.16■■□□□ 1.3
SDC3-202ENST00000339394 ZNF638Q14966 1978 aaKnown RBP23.16■■□□□ 1.3
SDC3-202ENST00000339394 PDGFRAP16234 1089 aa23.15■■□□□ 1.3
SDC3-202ENST00000339394 PITX1P78337 314 aaPredicted RBP23.15■■□□□ 1.3
SDC3-202ENST00000339394 MIB1Q86YT6 1006 aa23.15■■□□□ 1.3
SDC3-202ENST00000339394 ARID3BQ8IVW6 561 aaPredicted RBP23.15■■□□□ 1.3
SDC3-202ENST00000339394 ADAM32Q8TC27 787 aa23.15■■□□□ 1.3
SDC3-202ENST00000339394 DQX1Q8TE96 717 aaKnown RBP23.15■■□□□ 1.3
SDC3-202ENST00000339394 RXFP2Q8WXD0 754 aa23.15■■□□□ 1.3
SDC3-202ENST00000339394 ASB16Q96NS5 453 aa23.15■■□□□ 1.3
SDC3-202ENST00000339394 SMG9Q9H0W8 520 aaKnown RBP23.15■■□□□ 1.3
SDC3-202ENST00000339394 MARCH2Q9P0N8 246 aa23.15■■□□□ 1.3
SDC3-202ENST00000339394 RCCD1A6NED2 376 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 TMEM191CA6NGB0 347 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 MBL2P11226 248 aaPredicted RBP23.14■■□□□ 1.3
SDC3-202ENST00000339394 IL9P15248 144 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 VAV2P52735 878 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 SLC7A9P82251 487 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 ZXDBP98169 803 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 AAK1Q2M2I8 961 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 FAM78AQ5JUQ0 283 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 MSANTD2Q6P1R3 559 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 NT5C3BQ969T7 300 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 ACSF2Q96CM8 615 aaPredicted RBP23.14■■□□□ 1.3
SDC3-202ENST00000339394 CFAP57Q96MR6 1250 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 TRIM7Q9C029 511 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 CTTNBP2NLQ9P2B4 639 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 RASAL2Q9UJF2 1139 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 CPQQ9Y646 472 aa23.14■■□□□ 1.3
SDC3-202ENST00000339394 ZFP37Q9Y6Q3 630 aaPredicted RBP23.14■■□□□ 1.3
SDC3-202ENST00000339394 WEE1P30291 646 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 KCNQ1P51787 676 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 SLC25A52Q3SY17 297 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 SLC35G2Q8TBE7 412 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 SMARCD2Q92925 531 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 USP13Q92995 863 aaPredicted RBP23.14■■□□□ 1.29
SDC3-202ENST00000339394 NPY6RQ99463 290 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 ADAM33Q9BZ11 813 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 LACRTQ9GZZ8 138 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 SMOC2Q9H3U7 446 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 GKN1Q9NS71 199 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 TDP1Q9NUW8 608 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 SMPD4Q9NXE4 827 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 RRN3Q9NYV6 651 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 UVRAGQ9P2Y5 699 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 STAP1Q9ULZ2 295 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 CCL26Q9Y258 94 aa23.14■■□□□ 1.29
SDC3-202ENST00000339394 PRAMEF12O95522 483 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 TRUB2O95900 331 aaKnown RBP23.13■■□□□ 1.29
SDC3-202ENST00000339394 TFE3P19532 575 aaPredicted RBP23.13■■□□□ 1.29
SDC3-202ENST00000339394 GPD1P21695 349 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 SDC4P31431 198 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 CCDC14Q49A88 953 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 KIAA1328Q86T90 577 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 TAC4Q86UU9 113 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 RPGRIP1Q96KN7 1286 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 ZFRQ96KR1 1074 aaKnown RBP23.13■■□□□ 1.29
SDC3-202ENST00000339394 OSGEPQ9NPF4 335 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 EPS15L1Q9UBC2 864 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 ARHGAP26Q9UNA1 814 aa23.13■■□□□ 1.29
SDC3-202ENST00000339394 VCANP13611 3396 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms