RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ZMYM5Q9UJ78 669 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 POLR1DQ9Y2S0 133 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 MYO5CQ9NQX4 1742 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 FOXP2O15409 715 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 MTSS1O43312 755 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 GLP2RO95838 553 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 TRIM16LQ309B1 348 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 TDRD5Q8NAT2 981 aaKnown RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 EXD1Q8NHP7 514 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 PACSIN1Q9BY11 444 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 HSD17B3P37058 310 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 ANXA11P50995 505 aaKnown RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 CCR4P51679 360 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 NOA1Q8NC60 698 aaKnown RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 TPCN2Q8NHX9 752 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 RNASE11Q8TAA1 199 aaKnown RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 ELOVL6Q9H5J4 265 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 VTA1Q9NP79 307 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 MRPL39Q9NYK5 338 aaKnown RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 VPS9D1Q9Y2B5 631 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 CNTNAP5Q8WYK1 1306 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 A0A087X0T9 212 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 TRIM43BA6NCK2 446 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 SAC3D1A6NKF1 404 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 RPA1P27694 616 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 HERC6Q8IVU3 1022 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 WDR36Q8NI36 951 aaKnown RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 TK2O00142 265 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 SCAMP3O14828 347 aaKnown RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 THP07101 528 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 UMPSP11172 480 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 IGFBP4P22692 258 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 SGCGQ13326 291 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 PDIA6Q15084 440 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 LY6KQ17RY6 165 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 GPR141Q7Z602 305 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 ADAM32Q8TC27 787 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 KCTD14Q9BQ13 255 aaPredicted RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 SETD4Q9NVD3 440 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 DCDC2Q9UHG0 476 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 AP4E1Q9UPM8 1137 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 DISP1Q96F81 1524 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 RGL2O15211 777 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 MED24O75448 989 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 EGFRP00533 1210 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 COX10Q12887 443 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 C16orf72Q14CZ0 275 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 NCF4Q15080 339 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 EZH2Q15910 746 aaKnown RBP12.97□□□□□ -0.33
SDC3-201ENST00000336798 POM121L1PQ3SYA9 428 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 CBWD3Q5JTY5 395 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 CBWD5Q5RIA9 395 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 HHIPL2Q6UWX4 724 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 NLRP9Q7RTR0 991 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 SYTL1Q8IYJ3 562 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 EMILIN2Q9BXX0 1053 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 ACTR8Q9H981 624 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 SDR42E2A6NKP2 422 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 CCT8L1PA6NM43 557 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 CHURC1-FNTBB4DL54 471 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 GLRA3O75311 464 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 PON1P27169 355 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 CCT8P50990 548 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 TKTL1P51854 596 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 RPL10AP62906 217 aaKnown RBP12.97□□□□□ -0.33
SDC3-201ENST00000336798 IL5RAQ01344 420 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 STX5Q13190 355 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 TIGD7Q6NT04 549 aaPredicted RBP12.97□□□□□ -0.33
SDC3-201ENST00000336798 SLC47A2Q86VL8 602 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 SLC13A5Q86YT5 568 aaPredicted RBP12.97□□□□□ -0.33
SDC3-201ENST00000336798 TC2NQ8N9U0 490 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 CBWD1Q9BRT8 395 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 REXO4Q9GZR2 422 aaKnown RBP12.97□□□□□ -0.33
SDC3-201ENST00000336798 NRKQ7Z2Y5 1582 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 MEI4A8MW99 385 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 LSM1O15116 133 aaKnown RBP12.97□□□□□ -0.33
SDC3-201ENST00000336798 CLTBP09497 229 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 BGNP21810 368 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 AQP5P55064 265 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 NR6A1Q15406 480 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 IRAK1BP1Q5VVH5 260 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 MPZL3Q6UWV2 235 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 ZNF677Q86XU0 584 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 IL1RAPL1Q9NZN1 696 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 A0A087WZ62 844 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 MAPK1P28482 360 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 C3orf67Q6ZVT6 689 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 BTN2A1Q7KYR7 527 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 RIT2Q99578 217 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 FDXACB1Q9BRP7 624 aaPredicted RBP12.97□□□□□ -0.33
SDC3-201ENST00000336798 ISCUQ9H1K1 167 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 SPATA2Q9UM82 520 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 USP18Q9UMW8 372 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 USP20Q9Y2K6 914 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 TRIM13O60858 407 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 INAQ16352 499 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 CES3Q6UWW8 571 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 SPPL2AQ8TCT8 520 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 CLIP3Q96DZ5 547 aa12.97□□□□□ -0.33
SDC3-201ENST00000336798 UBXN6Q9BZV1 441 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms