RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TJP3O95049 919 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 SEC24AO95486 1093 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 NCAM1P13591 858 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 CHRNA3P32297 505 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 CXCR3P49682 368 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 CDR1P51861 262 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 ZNF135P52742 658 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 USP46P62068 366 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 PITX1P78337 314 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 SMC1AQ14683 1233 aaKnown RBP15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 ERMARDQ5T6L9 678 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 DRICH1Q6PGQ1 229 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 LILRA6Q6PI73 481 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 BBS12Q6ZW61 710 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 RTL10Q7L3V2 364 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 MAP7D3Q8IWC1 876 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 PDZD8Q8NEN9 1154 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 SPPL3Q8TCT6 385 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 TSC1Q92574 1164 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 SLCO2A1Q92959 643 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 FRMD8P1Q9BZ68 369 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 LRRC19Q9H756 370 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 ZWILCHQ9H900 591 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 NMUR1Q9HB89 426 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 SLC27A5Q9Y2P5 690 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 NR2E1Q9Y466 385 aa15.54■□□□□ 0.08
CCDC88C-202ENST00000334448 A0A1W2PQH9 124 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 TCRBV7S2A1N4TA0A589 114 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 BHMG1C9JSJ3 638 aaPredicted RBP15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 IRAK2O43187 625 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 ADH1AP07327 375 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 CNPP09543 421 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 CSH1P0DML2 217 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 CSH2P0DML3 217 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 GJC1P36383 396 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 ERVK-21P61565 698 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 DEUP1Q05D60 604 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 PLD1Q13393 1074 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 DPYSL3Q14195 570 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 SMTNL2Q2TAL5 461 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 KCNT1Q5JUK3 1230 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 BRMS1LQ5PSV4 323 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 SDHAF4Q5VUM1 108 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 BTBD8Q5XKL5 378 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 CCDC70Q6NSX1 233 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 TAC4Q86UU9 113 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 CCDC50Q8IVM0 306 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 SLC7A14Q8TBB6 771 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 RNF25Q96BH1 459 aaPredicted RBP15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 GDF15Q99988 308 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 AP1M1Q9BXS5 423 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 UBE2OQ9C0C9 1292 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 ANKZF1Q9H8Y5 726 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 PCDH18Q9HCL0 1135 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 OLA1Q9NTK5 396 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 PIGVQ9NUD9 493 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 MTMR10Q9NXD2 777 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 GMIPQ9P107 970 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 PCYOX1Q9UHG3 505 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 FBXW11Q9UKB1 542 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 FZD10Q9ULW2 581 aa15.53■□□□□ 0.08
CCDC88C-202ENST00000334448 PI4K2BG5E9Z4 385 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 SOAT2O75908 522 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 HMGA1P17096 107 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 IL4RP24394 825 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 ADRA1BP35368 520 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 PGFP49763 221 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 ATXN1P54253 815 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 TAF10Q12962 218 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 DHX34Q14147 1143 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 PPP2R5DQ14738 602 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 SHHQ15465 462 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 ELF2Q15723 593 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 CCNG2Q16589 344 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 ODF2Q5BJF6 829 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 PDE12Q6L8Q7 609 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 C8orf74Q6P047 294 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 WDR93Q6P2C0 686 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 FAM131BQ86XD5 332 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 MRPL43Q8N983 215 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 KCTD6Q8NC69 237 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 AUTS2Q8WXX7 1259 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 EDEM1Q92611 657 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 FBXO32Q969P5 355 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 SERPINB11Q96P15 392 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 KLHL5Q96PQ7 755 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 CDK5RAP1Q96SZ6 601 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 EMILIN2Q9BXX0 1053 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 FAM204AQ9H8W3 233 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 TLR8Q9NR97 1041 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 KLHL11Q9NVR0 708 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 DDIT4Q9NX09 232 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 RAB21Q9UL25 225 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 AP4E1Q9UPM8 1137 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 ASB3Q9Y575 518 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 INSL5Q9Y5Q6 135 aa15.52■□□□□ 0.08
CCDC88C-202ENST00000334448 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-202ENST00000334448 C2orf71A6NGG8 1288 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms