RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 IFRD2Q12894 506 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-202ENST00000317840 UBAP2LQ14157 1087 aaKnown RBP10.89□□□□□ -0.67
COL3A1-202ENST00000317840 IRGCQ6NXR0 463 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 CDHR3Q6ZTQ4 885 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 FAM172AQ8WUF8 416 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 HPDLQ96IR7 371 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 ZNF184Q99676 751 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-202ENST00000317840 SSU72Q9NP77 194 aaKnown RBP10.89□□□□□ -0.67
COL3A1-202ENST00000317840 LNPEPQ9UIQ6 1025 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 C2CD2Q9Y426 696 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 KIF13BQ9NQT8 1826 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 NFASCO94856 1347 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 PAPOLAP51003 745 aaKnown RBP10.89□□□□□ -0.67
COL3A1-202ENST00000317840 DNAL1Q4LDG9 190 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 RABGAP1LQ5R372 815 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 XYLT1Q86Y38 959 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 OR6J1Q8NGC5 347 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 CPB2Q96IY4 423 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 FAM167AQ96KS9 214 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 PPP1R36Q96LQ0 422 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 ACO2Q99798 780 aaKnown RBP10.89□□□□□ -0.67
COL3A1-202ENST00000317840 C2orf40Q9H1Z8 148 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 TMEM134Q9H6X4 195 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 PDLIM7Q9NR12 457 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 HMGXB4Q9UGU5 601 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 TAGLN3Q9UI15 199 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 DNAJC16Q9Y2G8 782 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 SCN9AQ15858 1988 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 THSD7AQ9UPZ6 1657 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 CXorf49A8MYA2 514 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-202ENST00000317840 PRR5-ARHGAP8B1AHC4 643 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 LIN7AO14910 233 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-202ENST00000317840 USP1O94782 785 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 STBD1O95210 358 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 LINGO3P0C6S8 592 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 TYK2P29597 1187 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 ARHGAP8P85298 464 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 ASPHQ12797 758 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 KIZQ2M2Z5 673 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 SCUBE3Q8IX30 993 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 OR6B3Q8NGW1 331 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 CEP41Q9BYV8 373 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 AP5M1Q9H0R1 490 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 EFR3BQ9Y2G0 817 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 STYXL1Q9Y6J8 313 aa10.89□□□□□ -0.67
COL3A1-202ENST00000317840 STK10O94804 968 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 SLC25A27O95847 323 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 TOP3BO95985 862 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 APOEP02649 317 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 DLDP09622 509 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 ADORA2AP29274 412 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 SLC25A3Q00325 362 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 PRKD1Q15139 912 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 GLRA4Q5JXX5 417 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 RIPOR1Q6ZS17 1223 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 C12orf29Q8N999 325 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 NETO2Q8NC67 525 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 ZNF333Q96JL9 665 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 GBA2Q9HCG7 927 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 KCNK4Q9NYG8 393 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 TSPAN16Q9UKR8 245 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 RPL26L1Q9UNX3 145 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 MAFBQ9Y5Q3 323 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 SNX9Q9Y5X1 595 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 BOLA3Q53S33 107 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 TRMT10BQ6PF06 316 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 LBX2Q6XYB7 198 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 ENDOVQ8N8Q3 282 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 PYDC1Q8WXC3 89 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 RNF157Q96PX1 679 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 TWNKQ96RR1 684 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 PHACTR1Q9C0D0 580 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 SMARCAD1Q9H4L7 1026 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 XAB2Q9HCS7 855 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 TXNRD2Q9NNW7 524 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 CYTH4Q9UIA0 394 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 MYH9P35579 1960 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 A0A087WZ62 844 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 MAGEA13PA6NCF6 341 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 ASB14A6NK59 587 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 PDE5AO76074 875 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 CTSHP09668 335 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 INSRRP14616 1297 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 SP100P23497 879 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 ASPAP45381 313 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 ZNF132P52740 706 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 NDST1P52848 882 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 YWHAZP63104 245 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 DSG1Q02413 1049 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 NOMO1Q15155 1222 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 FASTKD1Q53R41 847 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 DENND5BQ6ZUT9 1274 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 TMEM192Q8IY95 271 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 ARFGAP1Q8N6T3 406 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 NIPA2Q8N8Q9 360 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 SREK1Q8WXA9 508 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 AGAP3Q96P47 875 aa10.88□□□□□ -0.67
COL3A1-202ENST00000317840 FDXACB1Q9BRP7 624 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 STX18Q9P2W9 335 aaKnown RBP10.88□□□□□ -0.67
COL3A1-202ENST00000317840 PCDHGC3Q9UN70 934 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms