RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PREPLQ4J6C6 727 aaPredicted RBP20.52■□□□□ 0.88
LIME1-201ENST00000309546 USP39Q53GS9 565 aaKnown RBP20.52■□□□□ 0.88
LIME1-201ENST00000309546 EOGTQ5NDL2 527 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 GRAMD4Q6IC98 578 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 KLHDC10Q6PID8 442 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 RASSF3Q86WH2 238 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 ZNF513Q8N8E2 541 aaPredicted RBP20.52■□□□□ 0.88
LIME1-201ENST00000309546 TERB1Q8NA31 727 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 ANKRD52Q8NB46 1076 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 BHMTQ93088 406 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 SMOC1Q9H4F8 434 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 FAM124BQ9H5Z6 455 aaPredicted RBP20.52■□□□□ 0.88
LIME1-201ENST00000309546 METTL14Q9HCE5 456 aaKnown RBP20.52■□□□□ 0.88
LIME1-201ENST00000309546 POLMQ9NP87 494 aaPredicted RBP20.52■□□□□ 0.88
LIME1-201ENST00000309546 BCCIPQ9P287 314 aaKnown RBP eCLIP20.52■□□□□ 0.88
LIME1-201ENST00000309546 TSPAN16Q9UKR8 245 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 CTNND2Q9UQB3 1225 aa20.52■□□□□ 0.88
LIME1-201ENST00000309546 CACNA1AO00555 2505 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 BIN1O00499 593 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 FOXD2O60548 495 aaPredicted RBP20.51■□□□□ 0.87
LIME1-201ENST00000309546 GADD45BO75293 160 aaPredicted RBP20.51■□□□□ 0.87
LIME1-201ENST00000309546 RHOBTB1O94844 696 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 HMBSP08397 361 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 CHRM1P11229 460 aaPredicted RBP20.51■□□□□ 0.87
LIME1-201ENST00000309546 TYRP14679 529 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 MPLP40238 635 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 PPP1R2P41236 205 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 FMO5P49326 533 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 SGO2Q562F6 1265 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 NUDT18Q6ZVK8 323 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 RSRC2Q7L4I2 434 aaKnown RBP20.51■□□□□ 0.87
LIME1-201ENST00000309546 NELFBQ8WX92 580 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 CEP63Q96MT8 703 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 XPO6Q96QU8 1125 aaKnown RBP20.51■□□□□ 0.87
LIME1-201ENST00000309546 CDK5RAP1Q96SZ6 601 aaKnown RBP20.51■□□□□ 0.87
LIME1-201ENST00000309546 CLIC5Q9NZA1 410 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 HESX1Q9UBX0 185 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 PCDHGA5Q9Y5G8 931 aa20.51■□□□□ 0.87
LIME1-201ENST00000309546 ABCA7Q8IZY2 2146 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 NUP205Q92621 2012 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 A0A0A0MRY4 1105 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 STC2O76061 302 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 TBXAS1P24557 533 aaPredicted RBP20.5■□□□□ 0.87
LIME1-201ENST00000309546 TKTL1P51854 596 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 BCAT1P54687 386 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 CREB5Q02930 508 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 ELOA2Q8IYF1 753 aaPredicted RBP20.5■□□□□ 0.87
LIME1-201ENST00000309546 PGBD3Q8N328 593 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 HMGB4Q8WW32 186 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 ULBP1Q9BZM6 244 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 WDR35Q9P2L0 1181 aa20.5■□□□□ 0.87
LIME1-201ENST00000309546 TCRBV21S2A2A0A5A6 115 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 TULP2O00295 520 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 SLC30A4O14863 429 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 CACNG3O60359 315 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 ADAM23O75077 832 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 ZNF806P0C7X5 589 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 BCKDHBP21953 392 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 BMP6P22004 513 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 WASP42768 502 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 STX17P56962 302 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 YWHAGP61981 247 aaKnown RBP eCLIP20.49■□□□□ 0.87
LIME1-201ENST00000309546 PDE4CQ08493 712 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 BST2Q10589 180 aaKnown RBP20.49■□□□□ 0.87
LIME1-201ENST00000309546 RAB41Q5JT25 222 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 TTI2Q6NXR4 508 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 Q6ZNB5 142 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 TRMT11Q7Z4G4 463 aaKnown RBP20.49■□□□□ 0.87
LIME1-201ENST00000309546 ARHGAP18Q8N392 663 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 UBA3Q8TBC4 463 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 NDRG1Q92597 394 aaKnown RBP20.49■□□□□ 0.87
LIME1-201ENST00000309546 NT5C1BQ96P26 610 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 UBXN6Q9BZV1 441 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 LRRC4Q9HBW1 653 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 PLK2Q9NYY3 685 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 MARK1Q9P0L2 795 aa20.49■□□□□ 0.87
LIME1-201ENST00000309546 BICDL2A1A5D9 508 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 PPP1R3GB7ZBB8 358 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 XPO1O14980 1071 aaKnown RBP20.48■□□□□ 0.87
LIME1-201ENST00000309546 KCNA4P22459 653 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 ADIGQ0VDE8 80 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 MORC3Q14149 939 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 PMS2CLQ68D20 193 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 TMEM270Q6UE05 265 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 C11orf74Q86VG3 221 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 PPM1KQ8N3J5 372 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 ZNF276Q8N554 614 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 RLN3Q8WXF3 142 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 VPS45Q9NRW7 570 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 MARCH2Q9P0N8 246 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 STRIP2Q9ULQ0 834 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 PCDHB4Q9Y5E5 795 aa20.48■□□□□ 0.87
LIME1-201ENST00000309546 SLC12A8A0AV02 714 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 ZBED1O96006 694 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 KLKB1P03952 638 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 VDRP11473 427 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 HOXB2P14652 356 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 CORO1AP31146 461 aaKnown RBP20.47■□□□□ 0.87
LIME1-201ENST00000309546 DGKGP49619 791 aa20.47■□□□□ 0.87
LIME1-201ENST00000309546 COG7P83436 770 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms