RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 GGA1Q9UJY5 639 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 K7ENM7 598 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ZMYND10O75800 440 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 TSHRP16473 764 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SAT1P21673 171 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ADD2P35612 726 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 AP2S1P53680 142 aaPredicted RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ZRANB3Q5FWF4 1079 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ODR4Q5SWX8 454 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF767PQ75MW2 155 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 RTKN2Q8IZC4 609 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SLC7A3Q8WY07 619 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ZSCAN10Q96SZ4 725 aaPredicted RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 EYA3Q99504 573 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SLC25A23Q9BV35 468 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 TBC1D30Q9Y2I9 924 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 NEU2Q9Y3R4 380 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 PTCH1Q13635 1447 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 TUBGCP6Q96RT7 1819 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SFI1A8K8P3 1242 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 CLOCKO15516 846 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 GSPT1P15170 499 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 PORP16435 677 aaPredicted RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 OSBPP22059 807 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 NAB2Q15742 525 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SLC25A24Q6NUK1 477 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 CASP12Q6UXS9 341 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ZHX1-C8orf76Q96EF9 292 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 KLF6Q99612 283 aaPredicted RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 PSTPIP2Q9H939 334 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ADAM22Q9P0K1 906 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SLC25A13Q9UJS0 675 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MAPK8IP1Q9UQF2 711 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 PCDHGB6Q9Y5F9 930 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 USP32Q8NFA0 1604 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 CHST10O43529 356 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MOCS3O95396 460 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ALOX12P18054 663 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SERPINB5P36952 375 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 NR2C2P49116 596 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 CLCA4Q14CN2 919 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 PKN1Q16512 942 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 DENND5AQ6IQ26 1287 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 HDAC2Q92769 488 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.97□□□□□ -1.613e-30■■■■■ 247.4
CSMD3-201ENST00000297405 RNF17Q9BXT8 1623 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 AGRNO00468 2067 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SPDYE5A6NIY4 337 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 GSTT2BP0CG30 244 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 CYP2C9P11712 490 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 AKT1P31749 480 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 GUCA1AP43080 201 aaPredicted RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MRPS22P82650 360 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 PITPNAQ00169 270 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 TMEM132EQ6IEE7 984 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 PET117Q6UWS5 81 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SLC44A2Q8IWA5 706 aaPredicted RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 PPIL6Q8IXY8 311 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 KAT2AQ92830 837 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF333Q96JL9 665 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MED28Q9H204 178 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 METTL8Q9H825 291 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 VAT1LQ9HCJ6 419 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 LNPEPQ9UIQ6 1025 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 VAMP4O75379 141 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 CD2BP2O95400 341 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 TARSP26639 723 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 HSD17B3P37058 310 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 UBE3AQ05086 875 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 C1QBPQ07021 282 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 FAM160B1Q5W0V3 765 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 METTL16Q86W50 562 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MYO1HQ8N1T3 1032 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 CCDC107Q8WV48 283 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MAFIPQ8WZ33 124 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MIPEPQ99797 713 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 USP44Q9H0E7 712 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ELOVL6Q9H5J4 265 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 TRPM5Q9NZQ8 1165 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 PXDNLA1KZ92 1463 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SPDYE16A6NNV3 312 aaPredicted RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 KCNN4O15554 427 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MGRN1O60291 552 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 RPS6KA4O75676 772 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 UMPSP11172 480 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ITGALP20701 1170 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 FGFR3P22607 806 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 CCND2P30279 289 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 SPDYE2Q495Y8 402 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 DHDDSQ86SQ9 333 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 GALNT4Q8N4A0 578 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MAP4K1Q92918 833 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 CAMKK2Q96RR4 588 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 EXO5Q9H790 373 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 ZCCHC17Q9NP64 241 aaKnown RBP4.97□□□□□ -1.61
CSMD3-201ENST00000297405 MEMO1Q9Y316 297 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 TRAF6Q9Y4K3 522 aa4.97□□□□□ -1.61
CSMD3-201ENST00000297405 LAMB1P07942 1786 aa4.96□□□□□ -1.61
CSMD3-201ENST00000297405 BCLAF3A2AJT9 711 aaKnown RBP4.96□□□□□ -1.61
CSMD3-201ENST00000297405 ATP5J2-PTCD1G3V325 749 aa4.96□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms