RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 MTFR1Q15390 333 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 TAF2Q6P1X5 1199 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 CCDC185Q8N715 623 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 SOCS4Q8WXH5 440 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 PLCD4Q9BRC7 762 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 MTMR10Q9NXD2 777 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 SLC12A4Q9UP95 1085 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 KRT4P19013 534 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 YWHAZP63104 245 aaKnown RBP24.88■■□□□ 1.57
TRIM54-201ENST00000296098 ADIGQ0VDE8 80 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 XRCC4Q13426 336 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 SLC45A4Q5BKX6 768 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 CGB2Q6NT52 195 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 C4orf22Q6V702 233 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 PIGZQ86VD9 579 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 GRAMD1AQ96CP6 724 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 CSPG4P5Q96PW8 444 aa24.88■■□□□ 1.57
TRIM54-201ENST00000296098 PPP1R10Q96QC0 940 aaKnown RBP24.88■■□□□ 1.57
TRIM54-201ENST00000296098 PIAS1O75925 651 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 MATKP42679 507 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 MAGEA6P43360 314 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 NR2C2P49116 596 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 YWHAGP61981 247 aaKnown RBP eCLIP24.87■■□□□ 1.57
TRIM54-201ENST00000296098 GBE1Q04446 702 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 FAXCQ5TGI0 409 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 C17orf99Q6UX52 265 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 FUKQ8N0W3 1084 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 MZB1Q8WU39 189 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 DUSP16Q9BY84 665 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 GTF2IRD1Q9UHL9 959 aa24.87■■□□□ 1.57
TRIM54-201ENST00000296098 TCRBV9S1A1TA0A576 114 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 CYB561D2O14569 222 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 DAB1O75553 588 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 DNAJC8O75937 253 aaPredicted RBP24.86■■□□□ 1.57
TRIM54-201ENST00000296098 TOMM70O94826 608 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 ZWINTO95229 277 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 SULT1E1P49888 294 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 ZNF157P51786 506 aaPredicted RBP24.86■■□□□ 1.57
TRIM54-201ENST00000296098 FAM182AQ5T1J6 154 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 RGS9BPQ6ZS82 235 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 CCDC110Q8TBZ0 833 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 FAM149B1Q96BN6 582 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 ZFP42Q96MM3 310 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 QKIQ96PU8 341 aaKnown RBP eCLIP24.86■■□□□ 1.57
TRIM54-201ENST00000296098 M0QZ92 97 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 AVILO75366 819 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 IGHA2P01877 340 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 MRPS6P82932 125 aaKnown RBP24.86■■□□□ 1.57
TRIM54-201ENST00000296098 PDK4Q16654 411 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 HHATQ5VTY9 493 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 DEFB106AQ8N104 65 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 PITPNM3Q9BZ71 974 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 PRKAG3Q9UGI9 489 aa24.86■■□□□ 1.57
TRIM54-201ENST00000296098 AKR1A1P14550 325 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 NPR3P17342 541 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 ACAT1P24752 427 aaKnown RBP24.85■■□□□ 1.57
TRIM54-201ENST00000296098 SLC1A5Q15758 541 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 SLC25A52Q3SY17 297 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 FAM47EQ6ZV65 393 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 LRRN4Q8WUT4 740 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 CFAP36Q96G28 342 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 MAGEB5Q9BZ81 275 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 SLC40A1Q9NP59 571 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP24.85■■□□□ 1.57
TRIM54-201ENST00000296098 GRID1Q9ULK0 1009 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 TRPM7Q96QT4 1865 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 APRTP07741 180 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 PTPN1P18031 435 aaKnown RBP24.85■■□□□ 1.57
TRIM54-201ENST00000296098 SLC10A2Q12908 348 aaPredicted RBP24.85■■□□□ 1.57
TRIM54-201ENST00000296098 WSCD1Q658N2 575 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 VPS52Q8N1B4 723 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 AGGF1Q8N302 714 aaeCLIP24.85■■□□□ 1.57
TRIM54-201ENST00000296098 ETNK1Q9HBU6 452 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 USP3Q9Y6I4 520 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 IKBKGQ9Y6K9 419 aa24.85■■□□□ 1.57
TRIM54-201ENST00000296098 MYADML2A6NDP7 307 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 CLDN5O00501 218 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 TNPO2O14787 897 aaKnown RBP24.84■■□□□ 1.57
TRIM54-201ENST00000296098 GCATO75600 419 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 FAM163BP0C2L3 166 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 ARL4AP40617 200 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 KBTBD12Q3ZCT8 623 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 NCBP2-AS2Q69YL0 99 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 FAM131BQ86XD5 332 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 SLC44A1Q8WWI5 657 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 ALKBH8Q96BT7 664 aaKnown RBP24.84■■□□□ 1.57
TRIM54-201ENST00000296098 PNPLA8Q9NP80 782 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 SLC38A7Q9NVC3 462 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 RCOR3Q9P2K3 495 aaPredicted RBP24.84■■□□□ 1.57
TRIM54-201ENST00000296098 FZD10Q9ULW2 581 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 CDY2AQ9Y6F7 541 aa24.84■■□□□ 1.57
TRIM54-201ENST00000296098 IQANK1A0A1B0GTG1 560 aa24.83■■□□□ 1.57
TRIM54-201ENST00000296098 C6orf222P0C671 652 aaPredicted RBP24.83■■□□□ 1.57
TRIM54-201ENST00000296098 MRPS5P82675 430 aaKnown RBP24.83■■□□□ 1.57
TRIM54-201ENST00000296098 DNAJC3Q13217 504 aa24.83■■□□□ 1.57
TRIM54-201ENST00000296098 PTK7Q13308 1070 aa24.83■■□□□ 1.57
TRIM54-201ENST00000296098 FAM133BQ5BKY9 247 aaKnown RBP24.83■■□□□ 1.57
TRIM54-201ENST00000296098 LVRNQ6Q4G3 990 aa24.83■■□□□ 1.57
TRIM54-201ENST00000296098 KCNT2Q6UVM3 1135 aa24.83■■□□□ 1.57
TRIM54-201ENST00000296098 CAND1Q86VP6 1230 aaKnown RBP24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms