RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 BECN1Q14457 450 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 HSF5Q4G112 596 aaPredicted RBP10.25□□□□□ -0.77
VPS41-201ENST00000265745 ZNF394Q53GI3 561 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 SWT1Q5T5J6 900 aaKnown RBP10.25□□□□□ -0.77
VPS41-201ENST00000265745 PPP1R26Q5T8A7 1209 aaPredicted RBP10.25□□□□□ -0.77
VPS41-201ENST00000265745 ANKRD40Q6AI12 368 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 SCD5Q86SK9 330 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 ZC3H3Q8IXZ2 948 aaKnown RBP10.25□□□□□ -0.77
VPS41-201ENST00000265745 ZNF276Q8N554 614 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 TTC39CQ8N584 583 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 ALLCQ8N6M5 410 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 NAT16Q8N8M0 369 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 ERCC4Q92889 916 aaPredicted RBP10.25□□□□□ -0.77
VPS41-201ENST00000265745 JAKMIP2Q96AA8 810 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 TMEM176AQ96HP8 235 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 CNOT6LQ96LI5 555 aaKnown RBP10.25□□□□□ -0.77
VPS41-201ENST00000265745 TIGD1Q96MW7 591 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 UBXN6Q9BZV1 441 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 DNAI2Q9GZS0 605 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 FAM124BQ9H5Z6 455 aaPredicted RBP10.25□□□□□ -0.77
VPS41-201ENST00000265745 NMUR1Q9HB89 426 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 CISHQ9NSE2 258 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.25□□□□□ -0.77
VPS41-201ENST00000265745 COQ4Q9Y3A0 265 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 NUP210Q8TEM1 1887 aaPredicted RBP10.25□□□□□ -0.77
VPS41-201ENST00000265745 SDK1Q7Z5N4 2213 aa10.25□□□□□ -0.77
VPS41-201ENST00000265745 A0A1W2PQH9 124 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 TBC1D3BA6NDS4 549 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 SGK1O00141 431 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 SLC16A3O15427 465 aaKnown RBP10.24□□□□□ -0.77
VPS41-201ENST00000265745 ADAM23O75077 832 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 TULP3O75386 442 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 RHOBTB1O94844 696 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 SMC2O95347 1197 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 KLF8O95600 359 aaPredicted RBP10.24□□□□□ -0.77
VPS41-201ENST00000265745 IRF1P10914 325 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 RARGP13631 454 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 PLA2G4AP47712 749 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 SF3A2Q15428 464 aaKnown RBP10.24□□□□□ -0.77
VPS41-201ENST00000265745 ELF2Q15723 593 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 CCDC6Q16204 474 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 ANO4Q32M45 955 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 CBWD6Q4V339 395 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 USP39Q53GS9 565 aaKnown RBP10.24□□□□□ -0.77
VPS41-201ENST00000265745 CBWD3Q5JTY5 395 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 CBWD5Q5RIA9 395 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 BTBD8Q5XKL5 378 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 ARHGAP17Q68EM7 881 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 ANO7Q6IWH7 933 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 CCDC186Q7Z3E2 898 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 ELOA2Q8IYF1 753 aaPredicted RBP10.24□□□□□ -0.77
VPS41-201ENST00000265745 SLC4A11Q8NBS3 891 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 TXNDC5Q8NBS9 432 aaKnown RBP10.24□□□□□ -0.77
VPS41-201ENST00000265745 MDGA1Q8NFP4 955 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 OLIG1Q8TAK6 271 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 SMARCE1Q969G3 411 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 TSG101Q99816 390 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 GTPBP4Q9BZE4 634 aaKnown RBP10.24□□□□□ -0.77
VPS41-201ENST00000265745 RXFP3Q9NSD7 469 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 DEC1Q9P2X7 70 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 DNMT3LQ9UJW3 386 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 NUDT5Q9UKK9 219 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 INVSQ9Y283 1065 aa10.24□□□□□ -0.77
VPS41-201ENST00000265745 BCLAF3A2AJT9 711 aaKnown RBP10.23□□□□□ -0.77
VPS41-201ENST00000265745 TM4SF5O14894 197 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 MDM4O15151 490 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 TRIM24O15164 1050 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 MPLP40238 635 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 LRRC63Q05C16 580 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 KDSRQ06136 332 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 GOLGA8FQ08AF8 430 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 GOLGA8DPQ0D2H9 430 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 PREPLQ4J6C6 727 aaPredicted RBP10.23□□□□□ -0.77
VPS41-201ENST00000265745 RAB41Q5JT25 222 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 EOGTQ5NDL2 527 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 C10orf120Q5SQS8 335 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 TCERG1LQ5VWI1 586 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 Q6ZNB5 142 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 TADA2BQ86TJ2 420 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 PIGZQ86VD9 579 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 C12orf50Q8NA57 414 aaPredicted RBP10.23□□□□□ -0.77
VPS41-201ENST00000265745 ANKRD52Q8NB46 1076 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 SLC35C1Q96A29 364 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 TPSD1Q9BZJ3 242 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 VPS45Q9NRW7 570 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 CLIC5Q9NZA1 410 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 MARK1Q9P0L2 795 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 WDR35Q9P2L0 1181 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 ARMCX3Q9UH62 379 aaPredicted RBP10.23□□□□□ -0.77
VPS41-201ENST00000265745 HOOK1Q9UJC3 728 aaKnown RBP10.23□□□□□ -0.77
VPS41-201ENST00000265745 NAGPAQ9UK23 515 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 HCN2Q9UL51 889 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 STARD13Q9Y3M8 1113 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 TCHHQ07283 1943 aa10.23□□□□□ -0.77
VPS41-201ENST00000265745 KIF26AQ9ULI4 1882 aaPredicted RBP10.22□□□□□ -0.77
VPS41-201ENST00000265745 TRIM49BA6NDI0 452 aa10.22□□□□□ -0.77
VPS41-201ENST00000265745 NEDD8-MDP1E9PL57 170 aa10.22□□□□□ -0.77
VPS41-201ENST00000265745 SNPHO15079 494 aa10.22□□□□□ -0.77
VPS41-201ENST00000265745 CACNG3O60359 315 aa10.22□□□□□ -0.77
VPS41-201ENST00000265745 STC2O76061 302 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms